View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9192_low_7 (Length: 310)
Name: NF9192_low_7
Description: NF9192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9192_low_7 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 16 - 293
Target Start/End: Complemental strand, 41917251 - 41916974
Alignment:
| Q |
16 |
gacatcaatgttttttaggttatgcgagtttgtgactaaaagacatcgcaattgagtcgatataaattgtaaatgattatgatatttttgcaatattaag |
115 |
Q |
| |
|
||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41917251 |
gacatcaatgtattttaggttatgtgagtttgtgactaaaagacatcgcaattgagtcgatataaattgtaaatgattatgatatttttgcaatattaag |
41917152 |
T |
|
| Q |
116 |
aatcgcgacgtagagtgaattaaaaatcttggatttaataatttaaattcagtggttaccttgattgttgggtcagtggagtcatcaagaacttgtataa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41917151 |
aatcgcgacgtagagtgaattaaaaatcttggatttaataatttaaattcagtggttaccttgattgttgggtcagtggagtcatcaagaacttgtataa |
41917052 |
T |
|
| Q |
216 |
tgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataaacctacatacatacattaaaag |
293 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41917051 |
tgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataaacctacatacatacattaaaag |
41916974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 60; Significance: 1e-25; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 26823320 - 26823423
Alignment:
| Q |
172 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
271 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||| || || |||||||||| |||||||| || |||||| |
|
|
| T |
26823320 |
taccttgattgttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgataactgataa |
26823419 |
T |
|
| Q |
272 |
acct |
275 |
Q |
| |
|
|||| |
|
|
| T |
26823420 |
acct |
26823423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 279
Target Start/End: Original strand, 26786447 - 26786554
Alignment:
| Q |
172 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
271 |
Q |
| |
|
||||||||||||||||||||| || |||||||||| |||||| ||||| |||||||||||||| || || |||||||||| |||||||| | |||||| |
|
|
| T |
26786447 |
taccttgattgttgggtcagttgaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgataa |
26786546 |
T |
|
| Q |
272 |
acctacat |
279 |
Q |
| |
|
|||||||| |
|
|
| T |
26786547 |
acctacat |
26786554 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 26833235 - 26833338
Alignment:
| Q |
172 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
271 |
Q |
| |
|
|||||| ||||| || ||||| || |||||||||| |||||| ||||||||||||||||||||||| || ||||||||||| |||||||| || |||||| |
|
|
| T |
26833235 |
taccttaattgtaggatcagttgaatcatcaagaatttgtatgatgatcctatcagaaggccatgagagtccacatgcagcaccaattgataactgataa |
26833334 |
T |
|
| Q |
272 |
acct |
275 |
Q |
| |
|
|||| |
|
|
| T |
26833335 |
acct |
26833338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 172 - 275
Target Start/End: Original strand, 26799229 - 26799332
Alignment:
| Q |
172 |
taccttgattgttgggtcagtggagtcatcaagaacttgtataatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataa |
271 |
Q |
| |
|
||||||||| |||||||||||||| |||||||||| |||||| ||||| |||||||||||||| || || |||||||||| |||||||| | |||||| |
|
|
| T |
26799229 |
taccttgatggttgggtcagtggaatcatcaagaatttgtatgatgattctatcagaaggccaagagagttcacatgcagcaccaattgatagctgataa |
26799328 |
T |
|
| Q |
272 |
acct |
275 |
Q |
| |
|
|||| |
|
|
| T |
26799329 |
acct |
26799332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 194 - 278
Target Start/End: Complemental strand, 41546050 - 41545966
Alignment:
| Q |
194 |
gagtcatcaagaacttgtataatgatcctatcagaaggccatgaaagaccacatgcagctccaattgacaattgataaacctaca |
278 |
Q |
| |
|
||||||||||||||||| ||||| || |||||||| |||||||| | |||||||||||||||||||| |||||||| ||||||| |
|
|
| T |
41546050 |
gagtcatcaagaacttgaataataattctatcagatggccatgataacccacatgcagctccaattgataattgatacacctaca |
41545966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University