View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9192_low_9 (Length: 306)
Name: NF9192_low_9
Description: NF9192
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9192_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 286; Significance: 1e-160; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 290
Target Start/End: Complemental strand, 36083839 - 36083550
Alignment:
| Q |
1 |
tgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacac |
100 |
Q |
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| T |
36083839 |
tgtttgagaagccatgcaccctatagttttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacac |
36083740 |
T |
|
| Q |
101 |
cacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagt |
200 |
Q |
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| T |
36083739 |
cacaaaatcataccatcgaaaatcaagttcacaacaaagagcaagaagaagcacctctccttttaactaaaccacgaccgcacaccattgaagttgaagt |
36083640 |
T |
|
| Q |
201 |
tcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaaca |
290 |
Q |
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| T |
36083639 |
tcacaacaaagaccaagaagaagaacttctcctcttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaaca |
36083550 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 47 - 234
Target Start/End: Complemental strand, 36149987 - 36149803
Alignment:
| Q |
47 |
tggaagttcaagttcacaaagggcaaaaagaagaatttcttcacttaaccacaccacaaaatcataccatcgaaaatcaagttcacaacaaagagcaaga |
146 |
Q |
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| T |
36149987 |
tggaaattcaagcccacaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaaga |
36149888 |
T |
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| Q |
147 |
agaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcctc |
234 |
Q |
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| T |
36149887 |
aaaagcacctctacttttaactataccacatccgcacaccattgaagttcaag--cac-gcaaagacgaagaagaagcacttctcctc |
36149803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 36083921 - 36083840
Alignment:
| Q |
1 |
tgtttgagaagccatgcaccctata-gtt-ttttattactgcttactttggaagttcaagttcacaaagggcaaaaagaaga |
80 |
Q |
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||||||||||||||||| ||||||| ||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
36083921 |
tgtttgagaagccatgcgccctataagttcttttattactacttactttggaagttcaagttcacaaagggcaaaaagaaga |
36083840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 288
Target Start/End: Complemental strand, 36149972 - 36149818
Alignment:
| Q |
134 |
acaaagagcaagaagaagcacctctccttttaactaaaccacaaccgcacaccattgaagttgaagttcacaacaaagaccaagaagaagaacttctcct |
233 |
Q |
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||||||| |||||||||| || ||| | ||||| | ||||||| || ||| |||||| |||||||||||||||||| |||||| ||| || ||| || |
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| T |
36149972 |
acaaagatcaagaagaagaacttcttcacttaaccacaccacaaaatcatacccttgaagctgaagttcacaacaaagagcaagaaaaagcacctctact |
36149873 |
T |
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| Q |
234 |
cttaatcacaccacaaccggacaccatggaagttcaagcacacaaagaggaagaa |
288 |
Q |
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|||| | |||||| ||| ||||||| ||||||||||||| |||||| |||||| |
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| T |
36149872 |
tttaactataccacatccgcacaccattgaagttcaagcacgcaaagacgaagaa |
36149818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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