View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9195_high_1 (Length: 619)
Name: NF9195_high_1
Description: NF9195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9195_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 495; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 495; E-Value: 0
Query Start/End: Original strand, 13 - 601
Target Start/End: Complemental strand, 38932385 - 38931808
Alignment:
| Q |
13 |
tttggtgttaagtactttatctcatcaattaatgtacacacaggaacgggagtgttgggattggcaattccaggatgtggagagacatatgaagagccac |
112 |
Q |
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| T |
38932385 |
tttggtgttaagtactt-atctcatcaat----gtacacacaggaacgggagtattgggattggcaattccaggatgtggagagacatatgaagagccac |
38932291 |
T |
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| Q |
113 |
aatgggaaaaaggaggaaggccacaacaaccacaggatcgtcaccagaaggttcgttatgtgaaacagggtgaccttattgctattccacctggtgttcc |
212 |
Q |
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| T |
38932290 |
aatgggaaaaaggaggaaggccacaacaaccacaggatcgtcaccagaaggttcgttatgtgaaacagggtgaccttattgctattccacctggtgttcc |
38932191 |
T |
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| Q |
213 |
ttactggacctacaattacggcaataccccgcttattattgtcactctcctcgacacttccaataaactaaaccaactcgatcgtatcccaagagtaagc |
312 |
Q |
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| T |
38932190 |
ttactggacctacaattacggcaatacccctcttattattgtcactctcctcgacacttccaataaactaaaccaactcgatcgtatcccaagagtaagc |
38932091 |
T |
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| Q |
313 |
aacattaattataatctaacaattactcctaaatgcaaccaactttgttatatataaatgattcannnnnnnattcatgtcatgtcatgtagagatttta |
412 |
Q |
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| T |
38932090 |
aacattaattataatctaacaattactcctaaatgcaaccaactttgttatatataaatcattcattt-----tttat-tcatgtgatgtagagatttta |
38931997 |
T |
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| Q |
413 |
tctagctgggaatccagtaaaacagagtggtagaaagcgtggtgataaagaagaagaaactaacaacatgttcagtggttttgattcacgtttcttggga |
512 |
Q |
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| T |
38931996 |
tctagctgggaatccagtaaaacagagtggaagaaagcgtggtgataaagaagaagaaactaacaacatgttcagtggttttgattcacgtttcttggga |
38931897 |
T |
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| Q |
513 |
caagttttgaaagtgaaagaaagtataattagaaagcttcaatctccagatgaagaacatagaaagcaccaaattatacatgttaaagg |
601 |
Q |
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| T |
38931896 |
caagttttgaaagtgaaagaaagtataattagaaagcttcaatctcaagatgaacaacatagaaagcaccaaattatacatgttaaagg |
38931808 |
T |
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