View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9195_low_12 (Length: 240)
Name: NF9195_low_12
Description: NF9195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9195_low_12 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 19 - 240
Target Start/End: Complemental strand, 2668383 - 2668163
Alignment:
| Q |
19 |
tatccgacatcgactgataagccattgaattttagacgatgaaaccctcaatcgatgaaagataagacgatgctggaacaactgagtgagagacactgtt |
118 |
Q |
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| T |
2668383 |
tatccgacatcgactgataggccattgaattttagacgatgaaaccttcaatcgatgaaaggtaaggcgatgctggaacaactgagtgagagacattgtt |
2668284 |
T |
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| Q |
119 |
ctttctgaaatccactaactaaataaacaacgagcttcttaattactctgtgtccatcaatttata-nnnnnnnacattacttaaaattagctaggaaaa |
217 |
Q |
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|||||| ||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
2668283 |
ctttctagaattcactaactaaataaacaacgagcttcttaatta--ctgtgtccatcaatttatattttttttacattacttaaaattagctaggaaaa |
2668186 |
T |
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| Q |
218 |
tattccatagccaattagtcact |
240 |
Q |
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||||||| ||||||||||||||| |
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| T |
2668185 |
tattccacagccaattagtcact |
2668163 |
T |
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