View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9195_low_3 (Length: 660)

Name: NF9195_low_3
Description: NF9195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9195_low_3
NF9195_low_3
[»] chr5 (1 HSPs)
chr5 (18-642)||(5050990-5051619)


Alignment Details
Target: chr5 (Bit Score: 509; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 18 - 642
Target Start/End: Complemental strand, 5051619 - 5050990
Alignment:
Q  18 agatcatgattaagttagaagagattcatactattttatctaagcgctcgataaccctttatcattaagctaaaaaataattaacaagtgcaataattct 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5051619 agatcatgattaagttagaagagattcatactattttatctaagcgctcgataaccctttatcattaagctaaaaaataattaacaagtgcaataattct 5051520  T
Q  118 ataaaatcattctatcatcgagtgtttatcattttttaactcatgctttcataggacgaatccacgcatactaaatt--------------atgatttca 203  Q
    |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||              |||||||||    
T  5051519 ataaaatcattctatcatcgagtgtttatcattttttaactcgtgctttcataggacgaatccacgcatactaaatttggggctgcttattatgatttca 5051420  T
Q  204 ctaacttgatcactgattattagtaactaattgtgatctattaagtatttccgttaagagttaattaagtgaaa--gtagttgtcgaaataaaataaagc 301  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||| ||||||||||||||||    
T  5051419 ctaacttgatcactgattgttagtaactaattgtgatctattaagtatttccgttaagagttaattaagtgaaaaagtagttggcgaaataaaataaagc 5051320  T
Q  302 ttccaatatgatgttggtattcactttttgtttttcaattcgaaatgataagtttggcagagttaatcttgtttggtacatgatcaaacttatagtgttt 401  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5051319 ttccaatatgatgttggtattcactttttgtttttgaattcgaaatgataagtttggcagagttaatcttgtttggtacatgatcaaacttatagtgttt 5051220  T
Q  402 agacattcacttataagaacaaattttttaataattaataacaatttattctactttttgttgatgttgatgtttaaaacgttcggtcttatttttcata 501  Q
    ||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  5051219 agacattcacttataagaac-----------caattaataacaatttattctactttttgttgatgttgatgtttaaaaggttcggtcttatttttcata 5051131  T
Q  502 atggtcgatgtttttcataattgctaggaaattaaagaagcagccaattgttgttcgttcctcttcaaagaatatcatgcttgggcatttcttacgatga 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5051130 atggtcgatgtttttcataattgctaggaaattaaagaagcagcctattgttgttcgttcctcttcaaagaatatcatgcttgggcatttcttacgatga 5051031  T
Q  602 agcaactcctctgctgttatggccttccatgagagtcaatc 642  Q
    ||||| ||||||||||||||||||||||||| |||||||||    
T  5051030 agcaaatcctctgctgttatggccttccatgggagtcaatc 5050990  T

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