View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9195_low_7 (Length: 363)
Name: NF9195_low_7
Description: NF9195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9195_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 5 - 345
Target Start/End: Complemental strand, 31241129 - 31240789
Alignment:
| Q |
5 |
agtttggtgttgttttcatcgaacaaattgatttctcatgtttgtgtttcaatttgcagaattatttcattcataatttcgtaatagttatgttttttga |
104 |
Q |
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| T |
31241129 |
agtttggtgttgttttcatcgaacagattgatttctcgtgtttgtgttccaatttgcagaattatttcattcataatttcgtaatagttatgttttttga |
31241030 |
T |
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| Q |
105 |
agaaatcatcacaaacgcaactctctagatttacggcccatatatggattcccccttcaacataagtgtgactcctacagaatcaaccagacctatctca |
204 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31241029 |
agaaatcatcacaaacgcaactctctagatttacggcccatatatggattcccccttcaacataagtgtgactcctacagaatcaaccagacctatctca |
31240930 |
T |
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| Q |
205 |
tcaaacattccttattttaaagatatcatctccattcgtttcatttacactaaataannnnnnncttctacatccaatgtccatccaaaccctatcatag |
304 |
Q |
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| T |
31240929 |
tcaaacattccttattttaaagacatcatctccattcgtttcatttacactaaataattttttccttctacatccaatgttcatccaaaccctatcatag |
31240830 |
T |
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| Q |
305 |
atgactacttcatgtttccattcgaaatcttgtgcaatttt |
345 |
Q |
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| T |
31240829 |
attactacttcatgtttccattcgaaatcctgtgcaatttt |
31240789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 4e-54; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 4e-54
Query Start/End: Original strand, 148 - 324
Target Start/End: Original strand, 35422562 - 35422738
Alignment:
| Q |
148 |
atggattcccccttcaacataagtgtgactcctacagaatcaaccagacctatctcatcaaacattccttattttaaagatatcatctccattcgtttca |
247 |
Q |
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| T |
35422562 |
atggattcctccttcagcctaagtgtgactcctatagaatcatcccgacctatctcatcaaacattccttgttttaaagatatcatctccattcgtttca |
35422661 |
T |
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| Q |
248 |
tttacactaaataannnnnnncttctacatccaatgtccatccaaaccctatcatagatgactacttcatgtttcca |
324 |
Q |
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| T |
35422662 |
tttaccctaactcaactttttcttctacatccaatgtccacccaaaccctatcatcgatgactacttcatgtttcca |
35422738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 148 - 345
Target Start/End: Original strand, 35418181 - 35418380
Alignment:
| Q |
148 |
atggattcccccttcaacataagtgtgactcctacagaatcaaccagacctatctcatcaaacattccttattttaaagatatcatctccattcgtttca |
247 |
Q |
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||||||||| |||||| | ||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
35418181 |
atggattcctccttcagcctaagtgtgactcctatagaatcaactggacctatctcatcaaacattccttgttttaaagatatcatctccattcgtttca |
35418280 |
T |
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| Q |
248 |
tttacact--aaataannnnnnncttctacatccaatgtccatccaaaccctatcatagatgactacttcatgtttccattcgaaatcttgtgcaatttt |
345 |
Q |
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|||||||| |||| | |||| ||||||||| || | | |||||||||||| |||||||||||||||||||||| | | ||||| ||||||||| |
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| T |
35418281 |
tttacactaaaaatcaactttttcttccacatccaatatcaacctaaaccctatcatcgatgactacttcatgtttccatccaatatcttatgcaatttt |
35418380 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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