View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9195_low_8 (Length: 308)
Name: NF9195_low_8
Description: NF9195
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9195_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 43059345 - 43059058
Alignment:
| Q |
1 |
tgcatgcccgcgcaacctcttaagaagcaaaccagcattttcttgtattctgggaacaaattgcagggcgtgaaaattacatctgcaacgaagtctctgg |
100 |
Q |
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| T |
43059345 |
tgcatgcccgcgcaacctcttaagaagcaaccaagcagtttcttgtattctgg-aacaaattgcagggcgtgaaaattacatctgcaacgaagtctctaa |
43059247 |
T |
|
| Q |
101 |
atgaagtcctcaattaggaaaagcataatagggcttgagattaagaaagttaataacagtggagcattgtcgggctagagaagcaggtggtggtggtcgt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| |
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| T |
43059246 |
atgaagtcctcaattaggaaaagcataatagggcttgagattaagaaagttaataacagtatagtattgtcgggctagagaagcaggtggtggtggtcgt |
43059147 |
T |
|
| Q |
201 |
cgatcaagcttcttcttccaattaacatgttgttttatctgggtttgttgggttttgtgaaaattggagtatgtttttatgaaaattgttta |
292 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |
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| T |
43059146 |
cgatcaagcttcttcttccaattaacatgttgttttatctgggtttgttgggttttgtgaaaatt---gtacgtttttatgaaaattgttta |
43059058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 55439473 - 55439292
Alignment:
| Q |
1 |
tgcatgcccgcgcaacctcttaagaagcaaaccagcattttcttgtattctgggaacaaattgcagggcgtgaaaattacatctgcaacgaagtctctgg |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
55439473 |
tgcatgcccacgcaacctcttaagaagcaaaccagcagtttcttgtattctgggaacaaattgcagggcgtgaaaattacatctgcaacgaagtctctag |
55439374 |
T |
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| Q |
101 |
atgaagtcctcaattaggaaaagcataatagggcttgagattaagaaagttaataacagtggagcattgtcgggctagagaa |
182 |
Q |
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| T |
55439373 |
atgaagtcctcaattaggaaaagcataatagggcttgagattaagaaagttaataacagtagagcattgccgggctagagaa |
55439292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 55472010 - 55472130
Alignment:
| Q |
1 |
tgcatgcccgcgcaacctcttaagaagcaaaccagcat---tttcttgtattctgggaacaaattgcagggcgtgaaaat--tacatctgcaacgaagtc |
95 |
Q |
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|||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||| | ||||||||||||||| |
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| T |
55472010 |
tgcatgcccgtgcaacctcttaagaagcaaagcagcagcggtttcttgtattctgggaacaaattgcagggaatgaaaataaaaaatctgcaacgaagtc |
55472109 |
T |
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| Q |
96 |
tctggatgaagtcctcaatta |
116 |
Q |
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||| |||||||||||| |||| |
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| T |
55472110 |
tctagatgaagtcctcgatta |
55472130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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