View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9196_low_1 (Length: 533)

Name: NF9196_low_1
Description: NF9196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9196_low_1
NF9196_low_1
[»] chr5 (5 HSPs)
chr5 (18-349)||(7907329-7907660)
chr5 (359-509)||(7907699-7907858)
chr5 (414-486)||(28776850-28776923)
chr5 (415-453)||(29845054-29845092)
chr5 (417-453)||(6593177-6593213)
[»] chr4 (3 HSPs)
chr4 (412-455)||(39178390-39178433)
chr4 (415-453)||(47399409-47399447)
chr4 (410-438)||(30090128-30090156)
[»] chr3 (2 HSPs)
chr3 (409-473)||(47132237-47132302)
chr3 (412-453)||(34118828-34118869)
[»] chr1 (4 HSPs)
chr1 (419-453)||(10280521-10280555)
chr1 (412-471)||(35058893-35058954)
chr1 (409-438)||(2478489-2478518)
chr1 (410-438)||(9236988-9237016)


Alignment Details
Target: chr5 (Bit Score: 316; Significance: 1e-178; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 349
Target Start/End: Original strand, 7907329 - 7907660
Alignment:
Q  18 cttcaaattttcctagcttgtaataattcatcaacaattatttttctgcgatgtagtggaattgcatttgcaagtttgggaaacaaagaaaaaagtactt 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  7907329 cttcaaattttcctagcttgtaataattcatcaacaattatttttctgcgatgtagtggaattgcatttgcaagtttgggaaacaaagaaaaaactactt 7907428  T
Q  118 tgggagtaaaagttaccgaaggtgaagggaatttgcctaaactcgttctcacttctccagctggtagtgaggctgagatatatttgtttggtggttgcat 217  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7907429 tgggagtaaaagttaccgaaggtgaaggaaatttacctaaactcgttctcacttctccagctggtagtgaggctgagatatatttgtttggtggttgcat 7907528  T
Q  218 tacttcttggaaagttcccaatggcaaagaccttctttttgttcgtccggacgccgtttttaataagaagaaaccaataaggttcttacttttaattact 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7907529 tacttcttggaaagttcccaatggcaaagaccttctttttgttcgtccggacgccgtttttaataagaagaaaccaataaggttcttacttttaattact 7907628  T
Q  318 tcttctattagttattatgaagcaccgacacc 349  Q
    |||||||||||||||||||||||||| |||||    
T  7907629 tcttctattagttattatgaagcacccacacc 7907660  T

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Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 359 - 509
Target Start/End: Original strand, 7907699 - 7907858
Alignment:
Q  359 actgattgaatgtaaccatgtgagtgctacatatttattacattgttatttactaaggccctgtttggataaacaacttagtttacaacttatag----- 453  Q
    |||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||         
T  7907699 actgattgaatgtaaccatgtgggtgctacatatctattacattgttatttactaaggccctgtttggataaacaacttattttacaacttatagtatgt 7907798  T
Q  454 ----taagcacttatcgtgataagagctcatgtataacaagataaaataaagttaaattg 509  Q
        ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  7907799 ataataagcacttatcgtgataagacctcatgtataacaagataaaataaagttaaattg 7907858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 414 - 486
Target Start/End: Original strand, 28776850 - 28776923
Alignment:
Q  414 aggccctgtttggataaacaacttagtttacaacttatag--taagcacttatcgtgataagagctcatgtataa 486  Q
    |||| |||||||||||||||||||| ||| || |||||||  |||||||||||| ||||||| ||| ||||||||    
T  28776850 aggctctgtttggataaacaactta-tttgcagcttatagcctaagcacttatcatgataagtgcttatgtataa 28776923  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 453
Target Start/End: Complemental strand, 29845092 - 29845054
Alignment:
Q  415 ggccctgtttggataaacaacttagtttacaacttatag 453  Q
    |||||||||||||||||||||||| ||| ||||||||||    
T  29845092 ggccctgtttggataaacaacttaatttgcaacttatag 29845054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 417 - 453
Target Start/End: Original strand, 6593177 - 6593213
Alignment:
Q  417 ccctgtttggataaacaacttagtttacaacttatag 453  Q
    |||||||||||||||||||||| |||||| |||||||    
T  6593177 ccctgtttggataaacaacttaatttacagcttatag 6593213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 412 - 455
Target Start/End: Complemental strand, 39178433 - 39178390
Alignment:
Q  412 taaggccctgtttggataaacaacttagtttacaacttatagta 455  Q
    ||||| ||||||||||||||||||||| |||||| |||||||||    
T  39178433 taaggtcctgtttggataaacaacttattttacagcttatagta 39178390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 415 - 453
Target Start/End: Original strand, 47399409 - 47399447
Alignment:
Q  415 ggccctgtttggataaacaacttagtttacaacttatag 453  Q
    |||||||||||||||||||||||||||| || |||||||    
T  47399409 ggccctgtttggataaacaacttagtttgcagcttatag 47399447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 438
Target Start/End: Original strand, 30090128 - 30090156
Alignment:
Q  410 actaaggccctgtttggataaacaactta 438  Q
    |||||||||||||||||||||||||||||    
T  30090128 actaaggccctgtttggataaacaactta 30090156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 473
Target Start/End: Original strand, 47132237 - 47132302
Alignment:
Q  409 tactaaggccctgtttggataaacaacttagtttacaacttatag--taagcacttatcgtgataag 473  Q
    |||||||||||||||||||||||||||||| ||| || |||||||   ||||||||||| |||||||    
T  47132237 tactaaggccctgtttggataaacaactta-ttttcaccttatagcacaagcacttatcatgataag 47132302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 412 - 453
Target Start/End: Original strand, 34118828 - 34118869
Alignment:
Q  412 taaggccctgtttggataaacaacttagtttacaacttatag 453  Q
    |||||| ||||||||||||||||||||  |||||||||||||    
T  34118828 taaggctctgtttggataaacaacttaaattacaacttatag 34118869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 419 - 453
Target Start/End: Original strand, 10280521 - 10280555
Alignment:
Q  419 ctgtttggataaacaacttagtttacaacttatag 453  Q
    ||||||||||||||||||||||||||| |||||||    
T  10280521 ctgtttggataaacaacttagtttacagcttatag 10280555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 412 - 471
Target Start/End: Complemental strand, 35058954 - 35058893
Alignment:
Q  412 taaggccctgtttggataaacaacttagtttacaacttatag--taagcacttatcgtgata 471  Q
    |||| ||||||||||||||||| |||| ||| ||||||||||  |||||||||||| |||||    
T  35058954 taagaccctgtttggataaacagcttattttgcaacttatagcataagcacttatcatgata 35058893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 409 - 438
Target Start/End: Complemental strand, 2478518 - 2478489
Alignment:
Q  409 tactaaggccctgtttggataaacaactta 438  Q
    ||||||||||||||||||||||||||||||    
T  2478518 tactaaggccctgtttggataaacaactta 2478489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 410 - 438
Target Start/End: Complemental strand, 9237016 - 9236988
Alignment:
Q  410 actaaggccctgtttggataaacaactta 438  Q
    |||||||||||||||||||||||||||||    
T  9237016 actaaggccctgtttggataaacaactta 9236988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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