View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9196_low_2 (Length: 439)

Name: NF9196_low_2
Description: NF9196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9196_low_2
NF9196_low_2
[»] chr1 (10 HSPs)
chr1 (1-422)||(6512616-6513038)
chr1 (1-422)||(6517015-6517437)
chr1 (1-422)||(6521598-6522020)
chr1 (1-422)||(6506709-6507137)
chr1 (341-422)||(47713341-47713422)
chr1 (340-422)||(47745923-47746005)
chr1 (340-422)||(47760255-47760337)
chr1 (211-297)||(6523725-6523811)
chr1 (341-422)||(47718135-47718216)
chr1 (212-297)||(47778041-47778126)
[»] scaffold0341 (2 HSPs)
scaffold0341 (1-422)||(734-1162)
scaffold0341 (1-422)||(8387-8816)
[»] chr7 (1 HSPs)
chr7 (362-408)||(704378-704424)


Alignment Details
Target: chr1 (Bit Score: 411; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 411; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 6512616 - 6513038
Alignment:
Q  1 caggtgtgcattgaacaagagcatatatagtt-gattattattttgaccaacctcatcacttccaacagcatatttaaggtcactgtcacctgatgaagc 99  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6512616 caggtgtgcattgaacaagagcatatatagtttgattattattttgaccaacctcatcacttccaacagcatatttaaggtcactatcacctgatgaagc 6512715  T
Q  100 tctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttcatttgtagcattgttcaaactccatcctaaataaaaaggtctagtt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6512716 tctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttcatttgtagcattgttcaaactccatcctaaataaaaaggtctagtt 6512815  T
Q  200 tcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgtta 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6512816 tcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgtta 6512915  T
Q  300 gaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccata 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6512916 gaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccata 6513015  T
Q  400 agaggaattatagaaaccgtagt 422  Q
    |||||||||||||||||||||||    
T  6513016 agaggaattatagaaaccgtagt 6513038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 6517015 - 6517437
Alignment:
Q  1 caggtgtgcattgaacaagagcatatatagtt-gattattattttgaccaacctcatcacttccaacagcatatttaaggtcactgtcacctgatgaagc 99  Q
    |||||||||||||| | ||| ||||||| ||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||    
T  6517015 caggtgtgcattgagctagaccatatatggtttgattattatttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagc 6517114  T
Q  100 tctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttcatttgtagcattgttcaaactccatcctaaataaaaaggtctagtt 199  Q
    ||||||||||||||||||||| ||||||||| | |||||||||||||||||||||||| | ||  | |||||||||||| ||  |||| ||||||||||     
T  6517115 tctatttcttaaattatccaacaaatttttccgcactttatcaaattcatcttcatttatcgccgtcttcaaactccatgcttcataataaggtctagtg 6517214  T
Q  200 tcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgtta 299  Q
    ||||  ||||| ||||||||||||  ||||||||||||||||||| |||| ||||| ||||||||||| || | ||||| |||||||||| |||||||||    
T  6517215 tcatagagaccaaatattgaacggcttgagtaacgcaacatgcatctatcatcatcgtaccaaccaattgcttgttttctattttgacaacgttgtgtta 6517314  T
Q  300 gaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccata 399  Q
    |||| |||| |||||| |  |  |||||| |||||||||| ||||| | ||||||||| || |||||||| ||||||||||||||| ||||||| |||||    
T  6517315 gaaacacagttgaattttggagacaatttcgacaatcattcggttttaaatctcctctgcatagtccaattgcgtttactttgtcgctgtttatgccata 6517414  T
Q  400 agaggaattatagaaaccgtagt 422  Q
    |||||| ||||||||||||||||    
T  6517415 agaggagttatagaaaccgtagt 6517437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 1 - 422
Target Start/End: Complemental strand, 6522020 - 6521598
Alignment:
Q  1 caggtgtgcattgaacaagagcatatatagtt-gattattattttgaccaacctcatcacttccaacagcatatttaaggtcactgtcacctgatgaagc 99  Q
    |||||||||||||||||||| ||||||| ||| | |||||| || ||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||    
T  6522020 caggtgtgcattgaacaagaccatatatggtttggttattacttggaccaacctcatcacttcctacagcatatttaaggtcactgtcccctgatgcagc 6521921  T
Q  100 tctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttcatttgtagcattgttcaaactccatcctaaataaaaaggtctagtt 199  Q
    ||||||||||||| ||||||| |||   ||||  ||||| | ||| ||| | |||||||| || |||||   | ||||  | ||||||  ||||| | ||    
T  6521920 tctatttcttaaactatccaaaaaaaaattcaccactttgttaaactcaacctcatttgttgcgttgtttgtattccaaacaaaataagcaggtccaatt 6521821  T
Q  200 tcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgtta 299  Q
    || || ||||| ||||||||||||| |||||||||||||||||||   || || |  ||||| ||||| || |||||||| ||||||||| |||||||||    
T  6521820 tcgttgagaccaaatattgaacggtttgagtaacgcaacatgcattcttcatcgttgtaccatccaattgcttcttttcggttttgacaatgttgtgtta 6521721  T
Q  300 gaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccata 399  Q
    |||  |||| |||||| || | ||||||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||||| |||||  |||||||    
T  6521720 gaagaacagttgaatttttgaggcaattttgacaatcattgagtttgacatctcctctacatagtccaatcgcgtttactttgtcagtgttgtttccata 6521621  T
Q  400 agaggaattatagaaaccgtagt 422  Q
    |||||||||||||||||||||||    
T  6521620 agaggaattatagaaaccgtagt 6521598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 6506709 - 6507137
Alignment:
Q  1 caggtgtgcattgaacaagagcatatatagtt-gattattattttgaccaacctcatcacttccaacagcatatttaaggtcactgtcacctgatgaagc 99  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||| |||||| | |||||||||| |||||||||||||||||||| || || |||| |||    
T  6506709 caggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagc 6506808  T
Q  100 tctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttca------tttgtagcattgttcaaactccatcctaaataaaaaggt 193  Q
    |  |||| ||||||||| ||| |||||||||||  |||||||||||||||||||       ||||| || || | |||| ||||| | |       ||||    
T  6506809 taaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggt 6506908  T
Q  194 ctagtttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagtt 293  Q
    |   ||||||| | ||| |||||| |||||| |||| |||||||||||||| | || || || ||||| ||||| || ||||||||||||||||||||||    
T  6506909 cccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagtt 6507008  T
Q  294 gtgttagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttat 393  Q
    ||||||||| | ||| |||||| |  | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  6507009 gtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttac 6507108  T
Q  394 tccataagaggaattatagaaaccgtagt 422  Q
     ||||||||||||||||||||||||||||    
T  6507109 gccataagaggaattatagaaaccgtagt 6507137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 47713341 - 47713422
Alignment:
Q  341 ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagt 422  Q
    ||||| ||||||||||| || |||||||| |||||||||||||||||||||   ||||||||| |||| |||||||||||||    
T  47713341 ggtttaacatctcctctgcagagtccaatggcgtttactttgtcggtgttttggccataagagaaattgtagaaaccgtagt 47713422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 47745923 - 47746005
Alignment:
Q  340 gggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagt 422  Q
    |||||| ||||||||||| || |||||||| ||||||||||| || ||||||   ||||||||| |||| |||||||||||||    
T  47745923 gggtttaacatctcctctgcagagtccaatggcgtttactttatcagtgttttggccataagagaaattgtagaaaccgtagt 47746005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 340 - 422
Target Start/End: Original strand, 47760255 - 47760337
Alignment:
Q  340 gggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagt 422  Q
    |||||| |||||||||||||| |||||||| |||||||||||||| ||||||   ||||||||   ||| |||||||||||||    
T  47760255 gggtttaacatctcctctacagagtccaatggcgtttactttgtcagtgttttggccataagaaatattgtagaaaccgtagt 47760337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 211 - 297
Target Start/End: Complemental strand, 6523811 - 6523725
Alignment:
Q  211 gaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgt 297  Q
    |||||| ||||||| ||| ||||||||||||||| | || || |||||||||||||| || |||||| | ||| ||||||| |||||    
T  6523811 gaatatggaacggtctgaataacgcaacatgcatttttcatcttcataccaaccaattgcttctttttggtttggacaaagctgtgt 6523725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 341 - 422
Target Start/End: Original strand, 47718135 - 47718216
Alignment:
Q  341 ggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttattccataagaggaattatagaaaccgtagt 422  Q
    ||||| ||||||||||| || || ||||  |||||||||||||| ||||||   ||||||||| |||| |||||||||||||    
T  47718135 ggtttaacatctcctctgcagaggccaacggcgtttactttgtcagtgttttggccataagagaaattgtagaaaccgtagt 47718216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 212 - 297
Target Start/End: Complemental strand, 47778126 - 47778041
Alignment:
Q  212 aatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagttgtgt 297  Q
    ||||||||||||| ||||||||||||||||||| | || || || ||||||||||| || || |||   ||| |||||||||||||    
T  47778126 aatattgaacggtctgagtaacgcaacatgcatttttcatcctcgtaccaaccaattgcttcctttttgtttggacaaagttgtgt 47778041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 158; Significance: 6e-84; HSPs: 2)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 734 - 1162
Alignment:
Q  1 caggtgtgcattgaacaagagcatatatagtt-gattattattttgaccaacctcatcacttccaacagcatatttaaggtcactgtcacctgatgaagc 99  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||| |||||| | |||||||||| |||||||||||||||||||| || || |||| |||    
T  734 caggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagc 833  T
Q  100 tctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttca------tttgtagcattgttcaaactccatcctaaataaaaaggt 193  Q
    |  |||| ||||||||| ||| |||||||||||  |||||||||||||||||||       ||||| || || | |||| ||||| | |       ||||    
T  834 taaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggt 933  T
Q  194 ctagtttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcgattttgacaaagtt 293  Q
    |   ||||||| | ||| |||||| |||||| |||| |||||||||||||| | || || || ||||| ||||| || ||||||||||||||||||||||    
T  934 cccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgattttgacaaagtt 1033  T
Q  294 gtgttagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgtttat 393  Q
    ||||||||| | ||| |||||| |  | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||     
T  1034 gtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgtttac 1133  T
Q  394 tccataagaggaattatagaaaccgtagt 422  Q
     ||||||||||||||||||||||||||||    
T  1134 gccataagaggaattatagaaaccgtagt 1162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 8387 - 8816
Alignment:
Q  1 caggtgtgcattgaacaagagcatatatagtt-gattattattttgaccaacctcatcacttccaacagcatatttaaggtcactgtcacctgatgaagc 99  Q
    ||||||||||||||||||||||| |||| ||| ||||||||||| |||||| | |||||||||| |||||||||||||||||||| || || |||| |||    
T  8387 caggtgtgcattgaacaagagcaaatatggtttgattattatttggaccaatcacatcacttcctacagcatatttaaggtcactttcccccgatgcagc 8486  T
Q  100 tctatttcttaaattatccaataaatttttcagtactttatcaaattcatcttca------tttgtagcattgttcaaactccatcctaaataaaaaggt 193  Q
    |  |||| ||||||||| ||| |||||||||||  |||||||||||||||||||       ||||| || || | |||| ||||| | |       ||||    
T  8487 taaattttttaaattatacaacaaatttttcagccctttatcaaattcatcttcgacttcctttgttgcgttctgcaaattccatgcaatcatggcaggt 8586  T
Q  194 ctagtttcattcagaccgaatattgaacggtatgagtaacgcaacatgcatgtatcttcatcataccaaccaatagcctcttttcg-attttgacaaagt 292  Q
    |   ||||||| | ||| |||||| |||||| |||| |||||||||||||| | || || || ||||| ||||| || |||||||| |||||||||||||    
T  8587 cccatttcattgataccaaatattaaacggtgtgaggaacgcaacatgcatttttcatcgtcgtaccatccaattgcttcttttcgtattttgacaaagt 8686  T
Q  293 tgtgttagaaagacagatgaattctttatgcaattttgacaatcattgggtttgacatctcctctacaaagtccaatagcgtttactttgtcggtgttta 392  Q
    |||||||||| | ||| |||||| |  | ||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8687 tgtgttagaagggcagttgaattttggaggcaattttgacaatcatcgggtttgacatctcctctacacagtccaatagcgtttactttgtcggtgttta 8786  T
Q  393 ttccataagaggaattatagaaaccgtagt 422  Q
      ||||||||||||||||||||||||||||    
T  8787 cgccataagaggaattatagaaaccgtagt 8816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 362 - 408
Target Start/End: Complemental strand, 704424 - 704378
Alignment:
Q  362 agtccaatagcgtttactttgtcggtgtttattccataagaggaatt 408  Q
    ||||||||||||||||||||||| ||||||||  ||||||| |||||    
T  704424 agtccaatagcgtttactttgtcagtgtttatgtcataagatgaatt 704378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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