View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9196_low_3 (Length: 432)
Name: NF9196_low_3
Description: NF9196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9196_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 123; Significance: 5e-63; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 123; E-Value: 5e-63
Query Start/End: Original strand, 1 - 139
Target Start/End: Complemental strand, 26073921 - 26073783
Alignment:
| Q |
1 |
cttccaatacattccacccaatcaagggtgatgccttttattttgtacatgataaaaacaagttaaaataacattgatgaaaccctctctgatttaaatt |
100 |
Q |
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| T |
26073921 |
cttccaatgcattccacccaatcaagggtgatgccttttattttgtacataataaaaacaagttaaaacaacattgatgaaaccctctctgatttaaatt |
26073822 |
T |
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| Q |
101 |
atagttttcttaattgctttggtttgattattaatatta |
139 |
Q |
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| T |
26073821 |
atagttttcttaattactttggtttgattattaatatta |
26073783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 176 - 417
Target Start/End: Complemental strand, 26093082 - 26092837
Alignment:
| Q |
176 |
gaaataattgtgacttttagtgagcaaataa-gtttcatataaaactacaattaagacaatatattgtcccattnnnnnnnttaaattagctgtgtgcca |
274 |
Q |
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| T |
26093082 |
gaaataattgtgaattttaatgatcaaacaaagtttcatataaaactacaattaagacaatatattgtcccattaaaaaaattaaattagccgtgtgcca |
26092983 |
T |
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| Q |
275 |
caacacataatttatcttggaannnnnnnnnccaaagaagaattatattggaaacannnnnnnnn---gacaaagttatattcgaaacatgcctaccgta |
371 |
Q |
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| T |
26092982 |
caacacataatttatattggaatttttttttccaaagaagaattatattggaaacatttttttcttttgacaaagttatattcgaaacatgcataccgta |
26092883 |
T |
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| Q |
372 |
attttgtagatgaaatgaaaaatactttactggtttggtgaaacat |
417 |
Q |
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| T |
26092882 |
attttgtagatgaaatgaaaaatactttaatggtttggtgaaacat |
26092837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 131 - 227
Target Start/End: Complemental strand, 26073282 - 26073184
Alignment:
| Q |
131 |
ttaatattattactccattttgacagcattgtttgattattataagaaataattgtgactttt-agtgagcaaa-taagtttcatataaaactacaatt |
227 |
Q |
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| T |
26073282 |
ttaatattattactccattttgacagctttgtttgattattataagaaataattgtgacttttaagtgagcaaacaaagtttcatataaaactacaatt |
26073184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 65 - 168
Target Start/End: Complemental strand, 26093260 - 26093157
Alignment:
| Q |
65 |
aaaataacattgatgaaaccctctctgatttaaattatagttttcttaattgctttggtttgattattaatattattactcca-ttttgacagcattgtt |
163 |
Q |
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| T |
26093260 |
aaaacaacattgattaaaccctctct-atttaaattatagttttcttaattactttggtttgattattactattattactccatttttgacagctttgtt |
26093162 |
T |
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| Q |
164 |
tgatt |
168 |
Q |
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| T |
26093161 |
tgatt |
26093157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26093594 - 26093555
Alignment:
| Q |
1 |
cttccaatacattccacccaatcaagggtgatgcctttta |
40 |
Q |
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| T |
26093594 |
cttccaatacattccacccaatcaagggtgatgcctttta |
26093555 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 26093085 - 26093134
Alignment:
| Q |
172 |
ataagaaataattgtgacttttagtgagcaaa-taagtttcatataaaac |
220 |
Q |
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| T |
26093085 |
ataagaaataattgtgaattttaatgagcaaacaaagtttcatataaaac |
26093134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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