View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9196_low_4 (Length: 387)
Name: NF9196_low_4
Description: NF9196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9196_low_4 |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 19 - 307
Target Start/End: Complemental strand, 40139816 - 40139529
Alignment:
| Q |
19 |
gtctcgaccatggagatacaaaaagagtggacaatattgagaaatcgttatccgtcgatcgtctcatatgaaacgtttaattcatcaaaatgaagctcca |
118 |
Q |
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| T |
40139816 |
gtctcgaccatggagatataaaaagagtggacaatattgagaa-tcgttattcgtcgatcgttttatatgaaacgtttaattcatcaaaatgaagctcca |
40139718 |
T |
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| Q |
119 |
ggccaacaattatgtggaaaccatgttctctaaatttggtcagtatagtttaaaggaaccgatcgaattagacgnnnnnnnagtgagattttttcgtgga |
218 |
Q |
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| T |
40139717 |
gaccaacaactatgtggaaaccatattctctaaatttggtcagtatagtttgaagggaccgatcgaattagatgtttctttagtgagattttttcatgaa |
40139618 |
T |
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| Q |
219 |
attcagaaaaattagattcggtccaatacatacaaagaaattagagcttacatgtatgaattagatgaagtttgtttggttgattcatg |
307 |
Q |
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| T |
40139617 |
attcagaaaaattagattcggtccaatacatacaaagaaatcagagcttgcatgtatgaactagatgaagtttgtttggttgattcatg |
40139529 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 137 - 181
Target Start/End: Complemental strand, 29151952 - 29151908
Alignment:
| Q |
137 |
aaccatgttctctaaatttggtcagtatagtttaaaggaaccgat |
181 |
Q |
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| T |
29151952 |
aaccatgttctctatatttggtaagtacagtttaaagggaccgat |
29151908 |
T |
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