View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9196_low_7 (Length: 288)
Name: NF9196_low_7
Description: NF9196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9196_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-118; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 10 - 241
Target Start/End: Original strand, 5837637 - 5837868
Alignment:
| Q |
10 |
ttataccacaatataaaggtttgtagcgtaaccacgtctgcgactgcaatcgcaataataaggtgtttcctattcaattccgtcagtactgataaatcat |
109 |
Q |
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| T |
5837637 |
ttataccacaatataaaggtttgtagcgtaaccacatatgcgactgcaattgcaataataaggtgtttcctattcaattccgtaagtactgataaatcat |
5837736 |
T |
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| Q |
110 |
atatatgcagtggttaacctcagcctaatatagctcatgcatccactagatttatttagtttatcttctgttatattgttacgctttgctgcataaatta |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5837737 |
atatatgcagtggttaacctcagcctaatatagctcatgcatccactagatttatttagtttatcttctgttatattgttacgctttgctgcataaatta |
5837836 |
T |
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| Q |
210 |
tcctaattaacttgatatttgagatgttatat |
241 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
5837837 |
tcctaattaacttgatatttgagatgttatat |
5837868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 206 - 272
Target Start/End: Original strand, 5837869 - 5837935
Alignment:
| Q |
206 |
attatcctaattaacttgatatttgagatgttatattattgatctttcatcacaccaatatagatga |
272 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5837869 |
attatcctaattaacttgatatttgagatgttatattattgatctttcatcacaccaatatagatga |
5837935 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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