View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9196_low_9 (Length: 219)
Name: NF9196_low_9
Description: NF9196
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9196_low_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 120; Significance: 1e-61; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 1 - 124
Target Start/End: Original strand, 26823843 - 26823966
Alignment:
| Q |
1 |
attatcatcaaattattatataagaaagtttaaacgattcctcccattattctcacacatatatttattacctaacagaataaacaagactctgatctca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
26823843 |
attatcatcaaattattatataagaaagtttaaacgattcctcccattattctcacacatatatttattacctaacagaacaaacaagactctgatctca |
26823942 |
T |
|
| Q |
101 |
acacaaacaaaaactaagagccag |
124 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
26823943 |
acacaaacaaaaactaagagccag |
26823966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 7 - 117
Target Start/End: Original strand, 26835862 - 26835969
Alignment:
| Q |
7 |
atcaaattattatataagaaagtttaaacgattcctcccattattctcacacatatatttattacctaacagaataaacaagactctgatctcaacacaa |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||| |||||||| |||||||||| ||||| |
|
|
| T |
26835862 |
atcaaattattatataagaaagtttaaacgatccctctcattattctcacacatatat---ttgcctaacagaacaaacaagattctgatctcatcacaa |
26835958 |
T |
|
| Q |
107 |
acaaaaactaa |
117 |
Q |
| |
|
||||||||||| |
|
|
| T |
26835959 |
acaaaaactaa |
26835969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 161 - 204
Target Start/End: Original strand, 26824065 - 26824108
Alignment:
| Q |
161 |
tcaccaacctcgtcatcattattatcatcatggcttatccttat |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26824065 |
tcaccaacctcgtcatcattattatcatcatggcttatccttat |
26824108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 4 - 46
Target Start/End: Original strand, 26805173 - 26805215
Alignment:
| Q |
4 |
atcatcaaattattatataagaaagtttaaacgattcctccca |
46 |
Q |
| |
|
|||||||| || ||||||||||||||||||||||| ||||||| |
|
|
| T |
26805173 |
atcatcaagttgttatataagaaagtttaaacgatccctccca |
26805215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University