View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9197_low_1 (Length: 401)
Name: NF9197_low_1
Description: NF9197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9197_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 18 - 389
Target Start/End: Original strand, 7008043 - 7008414
Alignment:
| Q |
18 |
acaatctctttcacgtttaaaaccttgtttattagtgatttgttactaaatgagggtaaacaaagcaacttagatgaataattgatcttatacgtttggc |
117 |
Q |
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| T |
7008043 |
acaatctctttcgcgtttaaaagcttgtttattagtgatttgttactaaatgagggtaaacaaagcaacttagatgaataatatatcttatacgtttggt |
7008142 |
T |
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| Q |
118 |
tagtcataagagaaaagaagtccataatttaatttgtcctaagccaaaatgactaggatgcacacaatttcttgttattctatttgagtaatattttgca |
217 |
Q |
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| T |
7008143 |
tagtcataagagaaaagaagtccataatttaatttgtcctaagccaaaatgactaggatgcacacaatttcttgttattctatttgagtaatattttgca |
7008242 |
T |
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| Q |
218 |
ctcatgttgtggggaagcaatgaacatccccgaccaagtatgaatgaatggtgtgaaactttaaacagaatagtttaataaaacaagaaaattaatgtta |
317 |
Q |
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| T |
7008243 |
ctcatgttgtggggaagcaatgaacatccccgaccaagtatgaatgaatggtgtgaaactttaaacagaatagtttaataaaacaagaaaattaatgtta |
7008342 |
T |
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| Q |
318 |
acattgtcgtacactcataacctatgaagcacagacacagacacaaccctgacacatacacgtcaacaccaa |
389 |
Q |
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| T |
7008343 |
atattgtcgtacactcataacctatgaagcacagacacagacacgaccctgacacatacatgtcaacaccaa |
7008414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 28 - 174
Target Start/End: Original strand, 7010940 - 7011086
Alignment:
| Q |
28 |
tcacgtttaaaaccttgtttattagtgatttgttactaaatgagggtaaacaaagcaacttagatgaataattgatcttatacgtttggctagtcataag |
127 |
Q |
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| T |
7010940 |
tcacatttaaaagcttgattattagtgttgtgttactaaatgagggttaacaaagcaacttagatgtataaatgttcttatac-tttggttagtcattag |
7011038 |
T |
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| Q |
128 |
agaaaag-aagtccataatttaatttgtcctaagccaaaatgactagg |
174 |
Q |
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| T |
7011039 |
agaaatgtaagtccataatttactttttgctaagcaaatatgactagg |
7011086 |
T |
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