View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9197_low_4 (Length: 334)
Name: NF9197_low_4
Description: NF9197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9197_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 6974935 - 6975271
Alignment:
| Q |
1 |
agcagtatatccttcccaggtaaaatacaatgaacttataggaccaaaatcaatcttttgaagcaaaagctaagcatcaactaaatggaacacaaggacc |
100 |
Q |
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| T |
6974935 |
agcagtatatccttcccaggtaaaatacaatgaacttataggaccaaaatcaatcttttgaagcaaaagctaagcatcaactaaatggaacacaaggacc |
6975034 |
T |
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| Q |
101 |
acaaaacatgggcatctttctcattcttctgatttgacaggattctttctgatcctctggcctctagggtcttccaagttccagcctctccataatat-t |
199 |
Q |
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| T |
6975035 |
acaaaacatgggcatctttctcattcttctgatttgacaggattctttgtgatcctctggcctctagggtcttccaagttccagcctctccataatatat |
6975134 |
T |
|
| Q |
200 |
a---------atatatattcagacaaaatgtctcattgagatttggaaggctacaatagcttcaagtgtccacatcaataattcaacgttgctttagtat |
290 |
Q |
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| T |
6975135 |
atatatatatatatatattcagacaaaatgtctcattgagatttggaaggctacaatagcttcaagtgtccacatcaataattcaacgttgctttggtat |
6975234 |
T |
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| Q |
291 |
ttttctcgtattaggataacggttttgtctctgcttc |
327 |
Q |
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|||||||||||||||||||||||||||||| |||||| |
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| T |
6975235 |
ttttctcgtattaggataacggttttgtctttgcttc |
6975271 |
T |
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