View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9198_high_10 (Length: 241)
Name: NF9198_high_10
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 208; Significance: 1e-114; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 19 - 230
Target Start/End: Complemental strand, 9401598 - 9401387
Alignment:
| Q |
19 |
aaaaattccagtgtaggagcatttaattgttgaggaaacaaactttctgagacctgaaaagagaaataagagttacggttctttcactttgcagactttg |
118 |
Q |
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| T |
9401598 |
aaaaattccagtgtaggagcatttaattgttgaggaaacaaactttctgagacctgaaaagagaaataagagttacggttctttcactttgcagactttg |
9401499 |
T |
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| Q |
119 |
gacacatgattgataggcgtttgtctgtaatttggcattactaaattgtttgcccctgattgactgattcggctcattcataaagttgacaatgaatatt |
218 |
Q |
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| T |
9401498 |
gacacatgattgataggcgtttgtctgtaatttggcattactaaattgtttgcccctgattgactgattcagctcattcataaagttgacaatgaatatt |
9401399 |
T |
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| Q |
219 |
taaaacaccaaa |
230 |
Q |
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|||||||||||| |
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| T |
9401398 |
taaaacaccaaa |
9401387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 19 - 117
Target Start/End: Complemental strand, 9432333 - 9432235
Alignment:
| Q |
19 |
aaaaattccagtgtaggagcatttaattgttgaggaaacaaactttctgagacctgaaaagagaaataagagttacggttctttcactttgcagacttt |
117 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
9432333 |
aaaaattctagtgtaggagcatttaattgttgagggaacaaactttctgagacctgaaaagagaaataagagttacggttctttgactttgcagacttt |
9432235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 160 - 230
Target Start/End: Complemental strand, 9420007 - 9419937
Alignment:
| Q |
160 |
taaattgtttgcccctgattgactgattcggctcattcataaagttgacaatgaatatttaaaacaccaaa |
230 |
Q |
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| T |
9420007 |
taaattgtttgcccctgattgactgattcggctcattcataaagttgacaatgaatatttaaaacaccaaa |
9419937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 115 - 186
Target Start/End: Complemental strand, 9432199 - 9432129
Alignment:
| Q |
115 |
tttggacacatgattgataggcgtttgtctgtaatttggcattactaaattgtttgcccctgattgactgat |
186 |
Q |
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||||||||||||||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9432199 |
tttggacacatgattgataggtgtt-gtttgtaatttggcattactaaattgtttgcccctgattgactgat |
9432129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 190 - 230
Target Start/End: Complemental strand, 9412499 - 9412459
Alignment:
| Q |
190 |
gctcattcataaagttgacaatgaatatttaaaacaccaaa |
230 |
Q |
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| T |
9412499 |
gctcattcataaagttgacaatgaatatttaaagcaccaaa |
9412459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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