View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9198_high_8 (Length: 274)
Name: NF9198_high_8
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 14 - 241
Target Start/End: Original strand, 1538119 - 1538346
Alignment:
| Q |
14 |
cagagagaaaacaaagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtccttca |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1538119 |
cagagagaaaacaaagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtccttca |
1538218 |
T |
|
| Q |
114 |
acatttgtgaaaagaaaactagaaatgagaagaagtagttggattgaataaccaaccactgttgcaagcctctgtctatcattgacagagggatgctcag |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1538219 |
acatttgtgaaaagaaaactagaaatgagaagaagtagttggattgaataactaaccactgttgcaagcctctgtctatcattgacagagggatgctcag |
1538318 |
T |
|
| Q |
214 |
gttgtgttggtggtgcttcttcatcagc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1538319 |
gttgtgttggtggtgcttcttcatcagc |
1538346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 14 - 239
Target Start/End: Complemental strand, 10164488 - 10164263
Alignment:
| Q |
14 |
cagagagaaaacaaagaggagatgaaaagcagtcataaaggaataaaacaattttctgacatcttcatggttaatgaaatagtgatggattggtccttca |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||||| ||||| | ||| ||||||||| ||||||||||| |||||||||||| ||||||||| |
|
|
| T |
10164488 |
cagagagaaaacaaagaggagatgaaaagcagttacaaaggaaaaaaacgaatttttgacatctttatggttaatgagatagtgatggatcggtccttca |
10164389 |
T |
|
| Q |
114 |
acatttgtgaaaagaaaactagaaatgagaagaagtagttggattgaataaccaaccactgttgcaagcctctgtctatcattgacagagggatgctcag |
213 |
Q |
| |
|
| ||| ||||||||||| ||||||||||||||| ||||| |||||| |||| ||||||||||||||||||| || |||||||||||||| ||||||| | |
|
|
| T |
10164388 |
aggtttttgaaaagaaaagtagaaatgagaagaaatagtttgattgagtaactaaccactgttgcaagcctccgtgtatcattgacagagtgatgctcgg |
10164289 |
T |
|
| Q |
214 |
gttgtgttggtggtgcttcttcatca |
239 |
Q |
| |
|
|||||| ||||||||||||||||||| |
|
|
| T |
10164288 |
gttgtggtggtggtgcttcttcatca |
10164263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University