View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9198_low_1 (Length: 765)

Name: NF9198_low_1
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9198_low_1
NF9198_low_1
[»] chr4 (11 HSPs)
chr4 (267-678)||(26643110-26643522)
chr4 (51-203)||(26643517-26643669)
chr4 (285-675)||(26657856-26658247)
chr4 (112-450)||(26671195-26671536)
chr4 (300-402)||(26664209-26664311)
chr4 (110-202)||(26664412-26664504)
chr4 (8-56)||(26643684-26643732)
chr4 (691-746)||(9143531-9143584)
chr4 (146-206)||(26658329-26658389)
chr4 (8-56)||(26664564-26664612)
chr4 (11-56)||(26671617-26671662)
[»] chr3 (2 HSPs)
chr3 (110-384)||(54780829-54781106)
chr3 (691-746)||(17053531-17053584)
[»] scaffold0643 (1 HSPs)
scaffold0643 (691-746)||(6638-6691)
[»] chr2 (3 HSPs)
chr2 (691-746)||(30015391-30015444)
chr2 (691-746)||(30074488-30074541)
chr2 (691-746)||(12777733-12777786)


Alignment Details
Target: chr4 (Bit Score: 368; Significance: 0; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 267 - 678
Target Start/End: Complemental strand, 26643522 - 26643110
Alignment:
Q  267 tacattatacaggattatgagaaattgtttgccataaagtttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatg 366  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  26643522 tacattatacaggattttgagaaattgtttgccataaagtttcctgcttgcacaattgcttccaagaggctcatagattcattcaccataatcttagatg 26643423  T
Q  367 ttcaagccgtggtatgttaccatgaattgttcttcattgcattacctttgaatttctataacatgcaaaaatatttatgttataattgtgtttttaggac 466  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26643422 ttcaagccgtggtatgttaccatgaattgttcttcattgcattacctttgaatttctataacatgcaaaaatatttatgttataattgtgtttttaggac 26643323  T
Q  467 ttttccacctttctaaatcctgatagcgaaattcaatcgttaatacaaaagattgttggtgacacttaccctgctatggtgagcaatcttgtgatttttt 566  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26643322 ttttccacctttctaaatcctgatagcgaaattcaatcgttaatacaaaagattgttggtgacacttaccctgctatggtgagcaatcttgtgatttttt 26643223  T
Q  567 atgttccnnnnnnngatgttgtcaatttagttgtaggaaacatttaaagataaacatgtatttttgcctcgctgattagttatttttgtt-atttttatg 665  Q
    |||||||       |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||||||||    
T  26643222 atgttcctttttttgatgttgtcaatttagttgtaggaaacatttaaagataaacatgtacttttgcctcgctgattagttatttttgttcttttttatg 26643123  T
Q  666 aatgatacaggct 678  Q
    |||||||||||||    
T  26643122 aatgatacaggct 26643110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 145; E-Value: 6e-76
Query Start/End: Original strand, 51 - 203
Target Start/End: Complemental strand, 26643669 - 26643517
Alignment:
Q  51 gattgattaattgatgtccttgccgttgcatccaatgtgcttgaaatttcttgttttcttcaggattttgagttcaatgaattaaatgaaatcggcaagt 150  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26643669 gattaattaattgatgtccttgccgttgcatccaatgtgcttgaaatttcttgttttcttcaggattttgagttcaatgaattaaatgaaatcggcaagt 26643570  T
Q  151 attttccacatggctatcatggcgttgataaggaaggaaggcctgttttcatt 203  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  26643569 attttccacatggctatcatggcgttgataaggaaggaaggcctgtttacatt 26643517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 285 - 675
Target Start/End: Complemental strand, 26658247 - 26657856
Alignment:
Q  285 gagaaattgtttgccataaagtttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatgttcaagccgtggtatgtt 384  Q
    |||| |||||||||  ||||||||||||| ||||||||||||||||||||| ||||||||||| | |||| |||| | |||||||||| | |||||||||    
T  26658247 gagatattgtttgcggtaaagtttcctgcatgcacaattgcttccaagaggaacatagattcaataaccaaaatcatcgatgttcaaggcatggtatgtt 26658148  T
Q  385 accatgaattgttcttcattgcattacctttgaatttctataacatgcaaaaatattta-tgttataattgtgtttttaggacttttccacctttctaaa 483  Q
     | || |||| ||| | |||||||| ||| |||||||||||||||||||||||||||||   ||||| |||||||||||||||||||  | || ||||||    
T  26658147 gcaattaatt-ttcctaattgcattgcctgtgaatttctataacatgcaaaaatatttacacttatagttgtgtttttaggacttttttaactatctaaa 26658049  T
Q  484 tcctgatagcgaaattcaatcgttaatacaaaagattgttggtgacacttaccctgct---atggtgagcaatcttgtgattttttatgttccnnnnnnn 580  Q
       ||   |||||||  |||||  ||||||| ||||| ||| |||||  | |||||||    |||||||||||||||| |||||||||||||            
T  26658048 gtttg---gcgaaatcaaatcgcgaatacaagagattcttgatgacaactgccctgctgtggtggtgagcaatcttgttattttttatgttctttatttt 26657952  T
Q  581 gatgttgtcaatttagttgtaggaaacatttaaagataaacatgtatttttgcctcgctgattagttatttttgttat-ttttatgaatgatacag 675  Q
    ||| ||||   ||||||| |||||||||| | ||||| ||||| || || || ||| ||||||| | ||||||||| | |||||||||||||||||    
T  26657951 gattttgtaggtttagttataggaaacatattaagattaacatatacttatgtctcactgattaatgatttttgttctcttttatgaatgatacag 26657856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 112 - 450
Target Start/End: Complemental strand, 26671536 - 26671195
Alignment:
Q  112 aggattttgagttcaatgaattaaatgaaatcggcaagtattttccacatggctatcatggcgttgataaggaaggaaggcctgttttcattgaacttgt 211  Q
    ||||||| |||||||| ||| |||||||| | |  ||||||| |||||||||  ||||||| ||||||||||| ||||||||||||| |||||||    |    
T  26671536 aggatttcgagttcaacgaaataaatgaagttgttaagtattatccacatgggcatcatggtgttgataaggagggaaggcctgtttacattgaaagact 26671437  T
Q  212 tcgcgatagagtgg---ca---aaacttatgccagttactattagggagagatatgtgaagtacattatacaggattatgagaaattgtttgccataaag 305  Q
    |   |  | |||||   ||   |||||||||| |||||| | || ||| |||||||||||||||  | |||  || | ||||||||  ||||| || |||    
T  26671436 t---ggaaaagtggatccaaacaaacttatgcaagttacaactatggatagatatgtgaagtaccatgtacgcgagtttgagaaatcttttgcgattaag 26671340  T
Q  306 tttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatgttcaagccgtggtatgttaccatgaattgttcttcattg 405  Q
    |||||||||||||||||||||||||||||||||||||||||    |||| ||||||||||||||||| ||||||||||| |||| | |||||| ||||||    
T  26671339 tttcctgcttgcacaattgcttccaagaggcacatagattccagtaccacaatcttagatgttcaaggcgtggtatgttgccattatttgttcctcattg 26671240  T
Q  406 cattacctttgaatttctataacatgcaaaaatatttatgttata 450  Q
    ||||   | ||||||||| |||| ||||||||||||||| |||||    
T  26671239 cattgtttgtgaatttctttaacttgcaaaaatatttattttata 26671195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 300 - 402
Target Start/End: Complemental strand, 26664311 - 26664209
Alignment:
Q  300 ataaagtttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatgttcaagccgtggtatgttaccatgaattgttct 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  || || |||||||||| |||||| | | ||||||| ||||||||||||||    
T  26664311 ataaagtttcctgcttgcacaattgcttccaagaggcacatagattcaagcatcacaatcttagatcttcaaggcattgtatgttgccatgaattgttct 26664212  T
Q  400 tca 402  Q
    |||    
T  26664211 tca 26664209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 110 - 202
Target Start/End: Complemental strand, 26664504 - 26664412
Alignment:
Q  110 tcaggattttgagttcaatgaattaaatgaaatcggcaagtattttccacatggctatcatggcgttgataaggaaggaaggcctgttttcat 202  Q
    ||||||||||||||||||||||||||||||| |    ||||||  |||||||||||||||||| ||||||||||| ||||| |||||||||||    
T  26664504 tcaggattttgagttcaatgaattaaatgaagttattaagtataatccacatggctatcatggtgttgataaggagggaagacctgttttcat 26664412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 26643732 - 26643684
Alignment:
Q  8 gagtttggtgttgatacaattatgaaggtaaattatgtaacgagattga 56  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26643732 gagtttggtattgatacaattatgaaggtaaattatgtaacgagattga 26643684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 691 - 746
Target Start/End: Original strand, 9143531 - 9143584
Alignment:
Q  691 ttttgttgttatcctcgcctctaaggaaaaatcgtggcaattttagtgtggccaat 746  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  9143531 ttttgttgttatccacgcct--aaggaaaaatcgtggcaattttagtgtggccaat 9143584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 146 - 206
Target Start/End: Complemental strand, 26658389 - 26658329
Alignment:
Q  146 caagtattttccacatggctatcatggcgttgataaggaaggaaggcctgttttcattgaa 206  Q
    |||||||| ||||||||| || ||||| ||||||||| |||||||||||||||||||||||    
T  26658389 caagtattatccacatggataccatggtgttgataagaaaggaaggcctgttttcattgaa 26658329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 56
Target Start/End: Complemental strand, 26664612 - 26664564
Alignment:
Q  8 gagtttggtgttgatacaattatgaaggtaaattatgtaacgagattga 56  Q
    |||||||||| ||||||||||||| |||||||||||||||| |||||||    
T  26664612 gagtttggtgctgatacaattatggaggtaaattatgtaacaagattga 26664564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 11 - 56
Target Start/End: Complemental strand, 26671662 - 26671617
Alignment:
Q  11 tttggtgttgatacaattatgaaggtaaattatgtaacgagattga 56  Q
    ||||||| ||||||||||||| |||||||||||||||| |||||||    
T  26671662 tttggtgctgatacaattatggaggtaaattatgtaacaagattga 26671617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 110 - 384
Target Start/End: Complemental strand, 54781106 - 54780829
Alignment:
Q  110 tcaggattttgagttcaatgaattaaatgaaatcggcaagtattttccacatggctatcatggcgttgataaggaaggaaggcctgttttcattgaactt 209  Q
    |||||||||||||||||| || ||||||||| | |  ||||||| |||||||||| ||||||| || ||||||||||||||||||||||  ||||||       
T  54781106 tcaggattttgagttcaaggagttaaatgaagttgtgaagtattatccacatggccatcatggtgtagataaggaaggaaggcctgtttatattgaaaga 54781007  T
Q  210 gttcgcga--tagagtggca-aaacttatgccagttactattagggagagatatgtgaagtacattatacaggattatgagaaattgtttgccataaagt 306  Q
     || |  |  | ||   | | ||||| ||||  ||||| | || ||| |||||||| ||||||  | | || || | ||||||||  ||||| |||||||    
T  54781006 cttggaaaagttgatccgaacaaactgatgcaggttacaactatggatagatatgtaaagtaccatgtgcaagagtttgagaaatcttttgcaataaagt 54780907  T
Q  307 ttcctgcttgcacaattgcttccaagaggcacatagattcattcaccataatcttagatgttcaagccgtggtatgtt 384  Q
    ||||||||||||| |||||| | ||||||||||||||||||  ||||| |||||||||||||||||  ||||||||||    
T  54780906 ttcctgcttgcactattgctgcaaagaggcacatagattcaagcaccacaatcttagatgttcaaggagtggtatgtt 54780829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 691 - 746
Target Start/End: Complemental strand, 17053584 - 17053531
Alignment:
Q  691 ttttgttgttatcctcgcctctaaggaaaaatcgtggcaattttagtgtggccaat 746  Q
    |||||||||||||| | |||  |||||||||||||||||||| |||||||||||||    
T  17053584 ttttgttgttatccacacct--aaggaaaaatcgtggcaattatagtgtggccaat 17053531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0643 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 1)
Name: scaffold0643
Description:

Target: scaffold0643; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 691 - 746
Target Start/End: Complemental strand, 6691 - 6638
Alignment:
Q  691 ttttgttgttatcctcgcctctaaggaaaaatcgtggcaattttagtgtggccaat 746  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  6691 ttttgttgttatccacgcct--aaggaaaaatcgtggcaattttagtgtggccaat 6638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 691 - 746
Target Start/End: Original strand, 30015391 - 30015444
Alignment:
Q  691 ttttgttgttatcctcgcctctaaggaaaaatcgtggcaattttagtgtggccaat 746  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  30015391 ttttgttgttatccacgcct--aaggaaaaatcgtggcaattttagtgtggccaat 30015444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 691 - 746
Target Start/End: Original strand, 30074488 - 30074541
Alignment:
Q  691 ttttgttgttatcctcgcctctaaggaaaaatcgtggcaattttagtgtggccaat 746  Q
    |||||||||||||| |||||  ||||||||||||||||||||||||||||||||||    
T  30074488 ttttgttgttatccacgcct--aaggaaaaatcgtggcaattttagtgtggccaat 30074541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 691 - 746
Target Start/End: Original strand, 12777733 - 12777786
Alignment:
Q  691 ttttgttgttatcctcgcctctaaggaaaaatcgtggcaattttagtgtggccaat 746  Q
    |||||||||||||| |||||  ||||||||||| ||||||||||||||||||||||    
T  12777733 ttttgttgttatccacgcct--aaggaaaaatcatggcaattttagtgtggccaat 12777786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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