View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9198_low_12 (Length: 400)
Name: NF9198_low_12
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 19 - 386
Target Start/End: Original strand, 34353856 - 34354222
Alignment:
| Q |
19 |
acatatgcctggctctacattatagagggatatgttttgggtgcattttatttcgagcataacgacaaatatcaactcattatcctttacatgtattttt |
118 |
Q |
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| T |
34353856 |
acatatgcctggctctacattatagagggatatgttttgtgtgcattttatttcgagcataacgacaaatatcaactcattaccctttacatgtattttt |
34353955 |
T |
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| Q |
119 |
tcatatgatgtatatggacacaaagtgtttacgtgattggagtttgtcacgataatggagcttctcattttctacaatttgggtatgaaattagtggtga |
218 |
Q |
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| T |
34353956 |
tcatatgatgtatatgga-acaaagtgtttacgtgattggagtttgtcacgataatggagcttctcattttctacaatttgggtatgaaattagtggtga |
34354054 |
T |
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| Q |
219 |
aagatacataagagttagatttttcatttggccattgtgatcttggatatagaacgattcttaaggggtaagtggtggattatcaagaggtggaagcaaa |
318 |
Q |
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| T |
34354055 |
aagatacacaagagttagatttttcatttggccattgtgatcttggatatagaacgattcttaaggggtatgtggtggattatcaagacgtggaagcaaa |
34354154 |
T |
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| Q |
319 |
agataaaatcagtgtttttggttcattttaagaaaggctaaagcctcattttgaagtattttttattg |
386 |
Q |
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| T |
34354155 |
agataaaatcagtgtttttggttcattttaagaaaggctaaagcctcattttgaagtattttttattg |
34354222 |
T |
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