View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9198_low_14 (Length: 330)
Name: NF9198_low_14
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_low_14 |
 | |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] chr3 (1 HSPs) |
| |
|
Alignment Details
Target: chr6 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 11 - 330
Target Start/End: Complemental strand, 12189189 - 12188864
Alignment:
| Q |
11 |
gagcagagacgtgattcatgaaacaaaaacgacggcgatttacggttttacggtggtgttagctactgagagtgagagagagtttcaggatctgcctcca |
110 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12189189 |
gagcagagacgtgattcatgaaacaaaaacgacggcgatttacggttctacagtggtgttagctactgagagtgagagagagtttcaggatctgcctcca |
12189090 |
T |
|
| Q |
111 |
tttttctgcgtggattgacagagagcggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgtggtggtgg |
210 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12189089 |
tttttctgcgtggattgacagagaacggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgtggtggtgg |
12188990 |
T |
|
| Q |
211 |
tggttagatgcggcg------ctagggtttgaagaggaaggtgaaagtgtgtgaggtgagtgagagaattttttagaagaaatgaaatgaatgggtcaga |
304 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
12188989 |
tggttagatgcggcggcggcactagggtttgaagaggaaggtgaaagagtgtgaggtgaatgagagaattttttagaagaaatgaaatgaatgggttaga |
12188890 |
T |
|
| Q |
305 |
tctagggttagtggtctccccactct |
330 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
12188889 |
tctagggttagtggtctccccactct |
12188864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 37 - 330
Target Start/End: Complemental strand, 2430690 - 2430392
Alignment:
| Q |
37 |
aaacgacggcgatttacggttttacggtggtgttagctactgagagtgagagagagtttcaggatctgcctccatttttctgcgtggattgacagagagc |
136 |
Q |
| |
|
||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
2430690 |
aaacgacggcgatttacggctctacggtggtgttagtgactgagag------agagtttcaggatttgcctccatttttctgcgtgtattgacagagaaa |
2430597 |
T |
|
| Q |
137 |
ggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgtggtggtggtggttagatgcggcg------ctagg |
230 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||| |
|
|
| T |
2430596 |
ggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgaggtggtggtggttagaggcggcggcggcactagg |
2430497 |
T |
|
| Q |
231 |
gtttgaagaggaaggtgaaagtgtgtgaggtgagtgagagaattttttagaaga----aatgaaatgaatgggtcagatctagggttagtg-gtctcccc |
325 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
2430496 |
gtttgaagaggaaggtgaaagagtgtgaggcgagtgagagaattttttagaagaaatgaatgaaatgaatgagtcagatctagggttagtgagtctcccc |
2430397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 126 - 289
Target Start/End: Original strand, 14087377 - 14087546
Alignment:
| Q |
126 |
tgacagagagcggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgtggtggtggtggttaga------t |
219 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||| || | |||||||||||| ||| |
|
|
| T |
14087377 |
tgacagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatattggtatgaggatttgagggcgaggtggtggtggtgagaaacggcg |
14087476 |
T |
|
| Q |
220 |
gcggcgctagggtttgaagaggaaggtgaaagtgtgtgaggtgagtgagagaattttttagaagaaatga |
289 |
Q |
| |
|
||||| |||||||||| |||||||||||||| |||||||| ||| ||||||| ||| |||||||||||| |
|
|
| T |
14087477 |
gcggcactagggtttgtggaggaaggtgaaagagtgtgaggcgagggagagaaatttgtagaagaaatga |
14087546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 126 - 218
Target Start/End: Original strand, 22901955 - 22902047
Alignment:
| Q |
126 |
tgacagagagcggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgtggtggtggtggttaga |
218 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |
|
|
| T |
22901955 |
tgacagagaaaggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgaggtggttgtggttaga |
22902047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 137 - 218
Target Start/End: Original strand, 16309014 - 16309095
Alignment:
| Q |
137 |
ggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgtggtggtggtggttaga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||| ||||||||| |
|
|
| T |
16309014 |
ggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttgataggaggatttgatggtgaggtggttgtggttaga |
16309095 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 16308801 - 16308829
Alignment:
| Q |
11 |
gagcagagacgtgattcatgaaacaaaaa |
39 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
16308801 |
gagcagagacgtgattcatgaaacaaaaa |
16308829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 137 - 225
Target Start/End: Original strand, 19975949 - 19976037
Alignment:
| Q |
137 |
ggcgtaaaacaaagggaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgtggtggtggtggttagatgcggcg |
225 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||| || | ||||||| |||||| |
|
|
| T |
19975949 |
ggcgtaaaacaaagtgaatcaagttggaaagtggtgattcatgttggtaggaggatttgatggtgaggttgttggggttagaagcggcg |
19976037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 11 - 39
Target Start/End: Original strand, 19975736 - 19975764
Alignment:
| Q |
11 |
gagcagagacgtgattcatgaaacaaaaa |
39 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19975736 |
gagcagagacgtgattcatgaaacaaaaa |
19975764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University