View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9198_low_17 (Length: 282)
Name: NF9198_low_17
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 12 - 183
Target Start/End: Original strand, 3342687 - 3342855
Alignment:
| Q |
12 |
attatactacatgttttggaacattattttcttacacatccaccatatcaataacaatcctaatatttcacaaccacctatagacaaacataatccataa |
111 |
Q |
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| T |
3342687 |
attatactacatgttttggaacattattttcttacacatccaccatatcaataacaatcctactatttcacaacc---tatagacaaacataatccataa |
3342783 |
T |
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| Q |
112 |
acatttgaatcccaaacgttaacctctcatcacaatacataaacaaagaaagagaattgaagagaggacaaa |
183 |
Q |
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| T |
3342784 |
acatttgaatcccaaacgttaacctcttatcacaatacataaacaaagaaagagaattgaagagaggacaaa |
3342855 |
T |
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Target: chr2; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 187 - 257
Target Start/End: Original strand, 3342898 - 3342968
Alignment:
| Q |
187 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttatcttat |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3342898 |
agtaagtatcttatcttgtataatgtttacaattaaatctacgtagaaacatatttccacatttatcttat |
3342968 |
T |
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