View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9198_low_22 (Length: 250)
Name: NF9198_low_22
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_low_22 |
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Alignment Details
Target: chr1 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 40443879 - 40443648
Alignment:
| Q |
8 |
tctttatgaaaatatccatcctggtctttcctattcacctcaatccctgcctccaaatcattagcaatgagcttagaattgaaaaactggtcacccttaa |
107 |
Q |
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| T |
40443879 |
tctttatgaaaatatccatcttggtccttcctattcacctcaatccctgcctccaaatcattagcaatgagcttagaattgaaaaactggtcacccttaa |
40443780 |
T |
|
| Q |
108 |
aaggtaatagcacaagttgacaatcattaaccatagcttcaatcacagaactaaaaccaccatgacaaacataacatccaacactattgtgttttagaat |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40443779 |
aaggtaatagcacaagttgacaatcattaaccatagcttcaatcacagaactaaaaccaccatgacaaacataacatccaacactattgtgttttagaat |
40443680 |
T |
|
| Q |
208 |
aagctgctgctctaaccaaccagtgtgcacca |
239 |
Q |
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||||||||||| |||||||||||||||||||| |
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| T |
40443679 |
aagctgctgctgtaaccaaccagtgtgcacca |
40443648 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 8 - 239
Target Start/End: Complemental strand, 40441454 - 40441223
Alignment:
| Q |
8 |
tctttatgaaaatatccatcctggtctttcctattcacctcaatccctgcctccaaatcattagcaatgagcttagaattgaaaaactggtcacccttaa |
107 |
Q |
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|||| ||||||||||||||| | || || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |
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| T |
40441454 |
tcttgatgaaaatatccatcttcttcctttctattcacctcaatccctgcctccaaatcattagcaatgagcttagaattaaaaaactggtcacccttga |
40441355 |
T |
|
| Q |
108 |
aaggtaatagcacaagttgacaatcattaaccatagcttcaatcacagaactaaaaccaccatgacaaacataacatccaacactattgtgttttagaat |
207 |
Q |
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||||||| |||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
40441354 |
aaggtaacagcacaagttgacaatcattgaccatagcttcagtcacagaactaaaaccaccatgacaaacatagcatccaacactattgtgttttagaat |
40441255 |
T |
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| Q |
208 |
aagctgctgctctaaccaaccagtgtgcacca |
239 |
Q |
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||||||||| | |||||||||||||||||||| |
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| T |
40441254 |
aagctgctgttgtaaccaaccagtgtgcacca |
40441223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 32 - 192
Target Start/End: Complemental strand, 21876102 - 21875942
Alignment:
| Q |
32 |
tctttcctattcacctcaatccctgcctccaaatcattagcaatgagcttagaattgaaaaactggtcacccttaaaaggtaatagcacaagttgacaat |
131 |
Q |
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||||||||||||||||| | ||| |||| |||||||| ||||||||| |||||||| |||||||| |||||||| ||||||| | ||| | ||||||| |
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| T |
21876102 |
tctttcctattcacctctaccccagccttcaaatcatcagcaatgagtttagaatttaaaaactgatcacccttgaaaggtagcaacaccaactgacaat |
21876003 |
T |
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| Q |
132 |
cattaaccatagcttcaatcacagaactaaaaccaccatgacaaacataacatccaacact |
192 |
Q |
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||||||| |||||||| |||||||||||||||||| ||||||| |||||||| |||||||| |
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| T |
21876002 |
cattaactatagcttctatcacagaactaaaaccagcatgacacacataacacccaacact |
21875942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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