View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9198_low_27 (Length: 235)

Name: NF9198_low_27
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9198_low_27
NF9198_low_27
[»] chr7 (11 HSPs)
chr7 (11-203)||(15846814-15847006)
chr7 (11-203)||(15856024-15856216)
chr7 (11-203)||(6621260-6621452)
chr7 (11-203)||(36307973-36308158)
chr7 (86-203)||(11911423-11911540)
chr7 (11-195)||(21103510-21103694)
chr7 (103-203)||(44094833-44094934)
chr7 (41-78)||(42510147-42510184)
chr7 (42-94)||(39970000-39970052)
chr7 (42-95)||(2175097-2175150)
chr7 (60-96)||(21824398-21824434)
[»] chr2 (4 HSPs)
chr2 (11-203)||(17102674-17102866)
chr2 (11-203)||(32019408-32019600)
chr2 (57-94)||(27072380-27072417)
chr2 (60-96)||(20471197-20471233)
[»] chr6 (2 HSPs)
chr6 (11-203)||(17812214-17812406)
chr6 (11-203)||(33132181-33132373)
[»] chr1 (5 HSPs)
chr1 (11-203)||(17431135-17431327)
chr1 (11-203)||(44002218-44002410)
chr1 (11-203)||(3322075-3322267)
chr1 (36-78)||(26333729-26333771)
chr1 (42-95)||(18984745-18984798)
[»] chr5 (5 HSPs)
chr5 (11-203)||(11123569-11123761)
chr5 (37-96)||(13559975-13560034)
chr5 (48-95)||(19237666-19237713)
chr5 (57-94)||(36961986-36962023)
chr5 (57-94)||(42765297-42765334)
[»] chr8 (3 HSPs)
chr8 (11-200)||(14848322-14848511)
chr8 (41-78)||(13811731-13811768)
chr8 (42-78)||(19382757-19382793)
[»] chr4 (4 HSPs)
chr4 (71-203)||(16549376-16549508)
chr4 (11-195)||(12601768-12601962)
chr4 (56-96)||(6540589-6540629)
chr4 (30-97)||(38768724-38768791)
[»] chr3 (5 HSPs)
chr3 (11-195)||(35327008-35327191)
chr3 (30-117)||(10980952-10981039)
chr3 (143-203)||(32922727-32922787)
chr3 (60-96)||(2439511-2439547)
chr3 (63-95)||(27527380-27527412)
[»] scaffold1689 (1 HSPs)
scaffold1689 (60-96)||(934-970)
[»] scaffold0445 (1 HSPs)
scaffold0445 (60-96)||(14033-14069)
[»] scaffold0114 (1 HSPs)
scaffold0114 (60-96)||(11542-11578)


Alignment Details
Target: chr7 (Bit Score: 149; Significance: 8e-79; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 15847006 - 15846814
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  15847006 cagagaatgtaggactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 15846907  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  15846906 gccacattttatactagtatccactatttcactgtattacctgattatattcaagatgtccttattaatgaaatgagataattatctttctgt 15846814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 15856216 - 15856024
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  15856216 cagagaatgtaggactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 15856117  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| | |||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  15856116 gccacattttatactagtatccactatttcactgtattacctgattatattcaagatgtccttattaatgaaatgagataattatctttctgt 15856024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 6621452 - 6621260
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  6621452 cagagaatgtatgactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 6621353  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  6621352 gccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttattaatgaaatgagataattatctttctgt 6621260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 36307973 - 36308158
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| ||||  |||||||||||||||||||||  |||| | ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  36307973 cagagaatgtaggactacattctcatcttttttcacaaac--aaggatagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 36308070  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  ||||||||||||||||     ||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  36308071 gccacattttatgctagtatccactattt-----tattatctgattgtattcaagatgtccttattaatgaaatgagataattatctttctgt 36308158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 86 - 203
Target Start/End: Complemental strand, 11911540 - 11911423
Alignment:
Q  86 ggttgctcatagaccttctaaggcggccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatg 185  Q
    |||||||||||||| | ||| ||||||||||||| |  |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||    
T  11911540 ggttgctcatagacttgctagggcggccacattttatgctagtatccactatttcactctattacctgattgtattcaagatgtccttattaatgaaatg 11911441  T
Q  186 agataattatctttctgt 203  Q
    ||||||||||||||||||    
T  11911440 agataattatctttctgt 11911423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 21103694 - 21103510
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||| ||| ||||  |||| ||| ||||||||||| ||||| || || |||||||||||||||| |||||||||||||||||||  | ||| || |    
T  21103694 cagagaatctaggactactttctaatcctttttcacaaaatcaagagtagattttattaggagacaagcaaatgaggttgctcatagatttactagggtg 21103595  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattat 195  Q
    | ||||||  |  |||||||||||  |||||||||||||||||| | |||||||||||| |||||||||||||||||||| ||||    
T  21103594 gtcacattatatgctagtatccaccttttcactgtattacctgattgtattcaagatgttcttattaatgaaatgagatagttat 21103510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 103 - 203
Target Start/End: Complemental strand, 44094934 - 44094833
Alignment:
Q  103 ctaaggcggccacatttgacactagtatcc-actatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttct 201  Q
    |||||| |||||||||| |   |||||||| |||||||||||||||||| ||| |  ||||||||||||||||||||||||||||||| |||||||||||    
T  44094934 ctaaggtggccacattttatgttagtatcccactatttcactgtattacatgattgcattcaagatgtccttattaatgaaatgagatcattatctttct 44094835  T
Q  202 gt 203  Q
    ||    
T  44094834 gt 44094833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 42510184 - 42510147
Alignment:
Q  41 tttcacaaactcaagggttgagtttattaggagacaag 78  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  42510184 tttcacaaactcaagggttgagtttattaggcgacaag 42510147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 94
Target Start/End: Original strand, 39970000 - 39970052
Alignment:
Q  42 ttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctca 94  Q
    |||||||||||  |||||||||||| |||| |||||| |||||||||||||||    
T  39970000 ttcacaaactctcgggttgagtttactaggcgacaagcaaatgaggttgctca 39970052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 2175150 - 2175097
Alignment:
Q  42 ttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcat 95  Q
    ||||||||||| ||||| |||||||||  |||||||| | ||||||||||||||    
T  2175150 ttcacaaactctagggtggagtttattcagagacaagcagatgaggttgctcat 2175097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 21824398 - 21824434
Alignment:
Q  60 gagtttattaggagacaagtaaatgaggttgctcata 96  Q
    |||||||||||||| |||| |||||||||||||||||    
T  21824398 gagtttattaggaggcaagcaaatgaggttgctcata 21824434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 145; Significance: 2e-76; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 17102866 - 17102674
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  17102866 cagagaatgtaggactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 17102767  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  17102766 gccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttattaatgaaatgagataattatctttctgt 17102674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 32019600 - 32019408
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  32019600 cagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 32019501  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  ||||||||||||||||||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||||||    
T  32019500 gccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatatccttattaatgaaatgagataattatctttctgt 32019408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 27072380 - 27072417
Alignment:
Q  57 gttgagtttattaggagacaagtaaatgaggttgctca 94  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  27072380 gttgagtttattaggaggcaagcaaatgaggttgctca 27072417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 20471197 - 20471233
Alignment:
Q  60 gagtttattaggagacaagtaaatgaggttgctcata 96  Q
    |||||||||||||| |||| |||||||||||||||||    
T  20471197 gagtttattaggaggcaagcaaatgaggttgctcata 20471233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 141; Significance: 5e-74; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 17812214 - 17812406
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||| ||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  17812214 cagagaatttaggactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 17812313  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  17812314 gccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttattaatgaaatgagataattatctttctgt 17812406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 33132373 - 33132181
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  33132373 cagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 33132274  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  33132273 gccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttattaatgaaatgagataattatctttctgt 33132181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 137; Significance: 1e-71; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 17431135 - 17431327
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  17431135 cagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 17431234  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  |||||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  17431235 gccacattttatgctagtatccactatttcactatattacctgattgtattcaagatgtccttattaatgaaatgagataattatctttctgt 17431327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 44002218 - 44002410
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||  |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  44002218 cagagaatgtatgactaccttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 44002317  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||    
T  44002318 gccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttattaatgaaatgagataatcatctttctgt 44002410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 3322075 - 3322267
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| |||| |||||||||||||||||||||||||| ||| ||||||||||||||||||| ||||||| |||||||||||| | ||| ||||    
T  3322075 cagagaatgtaggactaccttctcatcttttttcacaaactcaaaggtagagtttattaggagacaagaaaatgagattgctcatagacttgctagggcg 3322174  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  ||| |||||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||| ||||||||||||||    
T  3322175 gccacattttatgctaatatccactattttactgtattacctgattgtattcaagatgtccttattaatgaaatgagagaattatctttctgt 3322267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 36 - 78
Target Start/End: Complemental strand, 26333771 - 26333729
Alignment:
Q  36 tcttttttcacaaactcaagggttgagtttattaggagacaag 78  Q
    |||| ||||||||||||||||||||||||||||||| ||||||    
T  26333771 tcttctttcacaaactcaagggttgagtttattaggcgacaag 26333729  T

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Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 18984798 - 18984745
Alignment:
Q  42 ttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcat 95  Q
    |||||||||||  |||| ||||||||| ||||||||| | ||||||||||||||    
T  18984798 ttcacaaactctcgggtggagtttattcggagacaagcagatgaggttgctcat 18984745  T

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Target: chr5 (Bit Score: 133; Significance: 3e-69; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 11 - 203
Target Start/End: Original strand, 11123569 - 11123761
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||| | | ||| ||||    
T  11123569 cagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgttcatagtcttgctagggcg 11123668  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    ||||||||| |  ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  11123669 gccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtccttattaatgaaatgagataattatctttctgt 11123761  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 37 - 96
Target Start/End: Original strand, 13559975 - 13560034
Alignment:
Q  37 cttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcata 96  Q
    |||||||||||||||| |  ||||||||||||||||| ||||| |||||||||| |||||    
T  13559975 cttttttcacaaactctaatgttgagtttattaggaggcaagtcaatgaggttgttcata 13560034  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 19237666 - 19237713
Alignment:
Q  48 aactcaagggttgagtttattaggagacaagtaaatgaggttgctcat 95  Q
    ||||| ||||| |||||||||||| |||||| ||||||||||||||||    
T  19237666 aactctagggtggagtttattaggcgacaagcaaatgaggttgctcat 19237713  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Complemental strand, 36962023 - 36961986
Alignment:
Q  57 gttgagtttattaggagacaagtaaatgaggttgctca 94  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  36962023 gttgagtttattaggaggcaagcaaatgaggttgctca 36961986  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 57 - 94
Target Start/End: Original strand, 42765297 - 42765334
Alignment:
Q  57 gttgagtttattaggagacaagtaaatgaggttgctca 94  Q
    ||||||||||||||||| |||| |||||||||||||||    
T  42765297 gttgagtttattaggaggcaagcaaatgaggttgctca 42765334  T

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Target: chr8 (Bit Score: 130; Significance: 2e-67; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 11 - 200
Target Start/End: Complemental strand, 14848511 - 14848322
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| ||||  ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| | ||| ||||    
T  14848511 cagagaatgtaggactactttctcatcttttttcacaaactcaagggtagagtttattaggagacaagcaaatgaggttgctcatagacttgctagggcg 14848412  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttc 200  Q
    || |||||| |  ||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||    
T  14848411 gctacattttatgctagtatccactatttcactgtattacctgattgtattcaagatatccttattaatgaaatgagataattatctttc 14848322  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 78
Target Start/End: Complemental strand, 13811768 - 13811731
Alignment:
Q  41 tttcacaaactcaagggttgagtttattaggagacaag 78  Q
    |||||||||||| |||||||||||||||||| ||||||    
T  13811768 tttcacaaactctagggttgagtttattaggcgacaag 13811731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 78
Target Start/End: Complemental strand, 19382793 - 19382757
Alignment:
Q  42 ttcacaaactcaagggttgagtttattaggagacaag 78  Q
    ||||||||||| |||||||||||||||||| ||||||    
T  19382793 ttcacaaactctagggttgagtttattaggcgacaag 19382757  T

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Target: chr4 (Bit Score: 93; Significance: 2e-45; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 71 - 203
Target Start/End: Original strand, 16549376 - 16549508
Alignment:
Q  71 gagacaagtaaatgaggttgctcatagaccttctaaggcggccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtc 170  Q
    |||||||| |||||||||||||||||||| | ||| || |||||||||| |  ||||||||||||||||||||||||||||||| | |||||||||||||    
T  16549376 gagacaagcaaatgaggttgctcatagacttgctagggtggccacattttatgctagtatccactatttcactgtattacctgattgtattcaagatgtc 16549475  T
Q  171 cttattaatgaaatgagataattatctttctgt 203  Q
    |||||||||||||||||||||||||||||||||    
T  16549476 cttattaatgaaatgagataattatctttctgt 16549508  T

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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 12601962 - 12601768
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| |||| |||| |||| |||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||| |  ||||| |    
T  12601962 cagagaatgtaggactaccttcgcatcctttttcacaaactcaagggtagagtttattaggagacaagcaaataaggttgctcatagacttcataaggtg 12601863  T
Q  111 gccacatttgacactagtatccactatttcac----------tgtattacctgactctattcaagatgtccttattaatgaaatgagataattat 195  Q
    ||||||||  |  |||||||||||  ||||||          |||||||||||| | |||||||||||| |||||||||||||||||||| ||||    
T  12601862 gccacattatatgctagtatccaccttttcacaccttttcattgtattacctgattgtattcaagatgttcttattaatgaaatgagatagttat 12601768  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 56 - 96
Target Start/End: Original strand, 6540589 - 6540629
Alignment:
Q  56 ggttgagtttattaggagacaagtaaatgaggttgctcata 96  Q
    |||||||||||||||||||||||||||||||||| ||||||    
T  6540589 ggttgagtttattaggagacaagtaaatgaggttactcata 6540629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 30 - 97
Target Start/End: Complemental strand, 38768791 - 38768724
Alignment:
Q  30 ttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatag 97  Q
    ||||| |||||||| ||||||||   ||||||||||||||||||||| | ||||||  ||||||||||    
T  38768791 ttctcgtctttttttacaaactccgaggttgagtttattaggagacaggcaaatgatattgctcatag 38768724  T

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Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 35327008 - 35327191
Alignment:
Q  11 cagagaatgtagaactatcttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcg 110  Q
    |||||||||||| | ||  |||||||| |||||||||||||||| ||| ||||||||||||| |||||  || |||||||||||||||| | ||| ||||    
T  35327008 cagagaatgtaggaatactttctcatcatttttcacaaactcaa-ggtagagtttattaggaaacaagctaacgaggttgctcatagacttgctagggcg 35327106  T
Q  111 gccacatttgacactagtatccactatttcactgtattacctgactctattcaagatgtccttattaatgaaatgagataattat 195  Q
    |||  |||| |  ||||||| |||   |||| |||||||||||| | |||| |||||||  |||||||| ||||| |||| ||||    
T  35327107 gccggattttatgctagtattcaccggttcattgtattacctgattatatttaagatgtttttattaattaaatgggatagttat 35327191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 30 - 117
Target Start/End: Complemental strand, 10981039 - 10980952
Alignment:
Q  30 ttctcatcttttttcacaaactcaagggttgagtttattaggagacaagtaaatgaggttgctcatagaccttctaaggcggccacat 117  Q
    |||||||||||||||||||||||   ||||||||||||||||||||||  |||| ||||||||||||| | | ||| |||||||||||    
T  10981039 ttctcatcttttttcacaaactcgcaggttgagtttattaggagacaaacaaataaggttgctcatagtcttgctagggcggccacat 10980952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 143 - 203
Target Start/End: Original strand, 32922727 - 32922787
Alignment:
Q  143 tgtattacctgactctattcaagatgtccttattaatgaaatgagataattatctttctgt 203  Q
    |||||||||||| | |||||||||||| |||||||||||||||||||| ||||||||||||    
T  32922727 tgtattacctgattgtattcaagatgttcttattaatgaaatgagatagttatctttctgt 32922787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 2439511 - 2439547
Alignment:
Q  60 gagtttattaggagacaagtaaatgaggttgctcata 96  Q
    |||||||||||||| |||| |||||||||||||||||    
T  2439511 gagtttattaggaggcaagcaaatgaggttgctcata 2439547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 95
Target Start/End: Original strand, 27527380 - 27527412
Alignment:
Q  63 tttattaggagacaagtaaatgaggttgctcat 95  Q
    |||| ||||||||||||||||||||||||||||    
T  27527380 tttaataggagacaagtaaatgaggttgctcat 27527412  T

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Target: scaffold1689 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1689
Description:

Target: scaffold1689; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 934 - 970
Alignment:
Q  60 gagtttattaggagacaagtaaatgaggttgctcata 96  Q
    |||||||||||||| |||| |||||||||||||||||    
T  934 gagtttattaggaggcaagcaaatgaggttgctcata 970  T

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Target: scaffold0445 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0445
Description:

Target: scaffold0445; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 14069 - 14033
Alignment:
Q  60 gagtttattaggagacaagtaaatgaggttgctcata 96  Q
    |||||||||||||| |||| |||||||||||||||||    
T  14069 gagtttattaggaggcaagaaaatgaggttgctcata 14033  T

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Target: scaffold0114 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0114
Description:

Target: scaffold0114; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 11578 - 11542
Alignment:
Q  60 gagtttattaggagacaagtaaatgaggttgctcata 96  Q
    |||||||||||||| |||| |||||||||||||||||    
T  11578 gagtttattaggaggcaagcaaatgaggttgctcata 11542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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