View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9198_low_29 (Length: 224)
Name: NF9198_low_29
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 169; Significance: 9e-91; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 18 - 210
Target Start/End: Complemental strand, 40444136 - 40443944
Alignment:
| Q |
18 |
agattcgtagtgagtatgtcagaatcaaggtgatccaccgtgatcttgcaaaagctacagttcagatgaaaatcaccatgattccaatcatgcattaagc |
117 |
Q |
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| T |
40444136 |
agatccgtagtgagtatgtcagaatcaaggtgatccatcgtgatcttgcaaaagctacagttcagatgaaaatcaccatgattccaatcatgcattaagc |
40444037 |
T |
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| Q |
118 |
caaagacttcagctgagcaaccagatcaatgataaagttattctgaatttctttatctaacataaacttcctccatttcatgcggttttctct |
210 |
Q |
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| T |
40444036 |
caaagacttcagctgagaaaccagatcaatgataaatttattctgattttctttatctaacataaacttcctccatttcatgtggttttctct |
40443944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 83 - 210
Target Start/End: Complemental strand, 40441646 - 40441519
Alignment:
| Q |
83 |
atgaaaatcaccatgattccaatcatgcattaagccaaagacttcagctgagcaaccagatcaatgataaagttattctgaatttctttatctaacataa |
182 |
Q |
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|||||| ||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
40441646 |
atgaaactcaccgtaattccaatcatgcattaggccaaagacttcagctgagcaaccagatcaatgataaatttattctgaatttctttatctaacataa |
40441547 |
T |
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| Q |
183 |
acttcctccatttcatgcggttttctct |
210 |
Q |
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| T |
40441546 |
acttcctccatttcatgtggttttctct |
40441519 |
T |
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