View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9198_low_3 (Length: 651)
Name: NF9198_low_3
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 525; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 525; E-Value: 0
Query Start/End: Original strand, 11 - 634
Target Start/End: Original strand, 38026007 - 38026630
Alignment:
| Q |
11 |
tttggtgttgttaagttggctcatgaatgtgtgttgactttggagaggttaaattgaaattgtctaatggtaccaaattaaattttaaggatgtgaaaca |
110 |
Q |
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| T |
38026007 |
tttggtgatgtgaagttggctcatgaatgt-tgttgactttggagaggctaaattgaaattgtctaatggtaccaaattaaattttaaggatgtgaaaca |
38026105 |
T |
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| Q |
111 |
atgtttcagacatttggttgaatttattttcaatagatacatgttatgttatgctatgaaagttatgagaacttgtacttgggggacacttaaaacttac |
210 |
Q |
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| T |
38026106 |
atgtttcagacatttggttgaatttattttcaatagatacatgttatgttatgctatgaaagttatgagaacttgtacttgggggacacttaaaatttac |
38026205 |
T |
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| Q |
211 |
aaatggttctatgattgttgcaagaggtgtggacatgttgtcatatgatgttttttccttatcacttatcttaatttttagtttagtccttagtgttttt |
310 |
Q |
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| T |
38026206 |
aaatggttctatgattgttgcaagaggtgtggacatgttgtcatatgatgttttttccttatcacttatcttaatttttagtttagtccttagtgttttt |
38026305 |
T |
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| Q |
311 |
agacaacttggaggtaaagaaaacaaagaattatactgttttgaatttacaatatcgtgacacaatctctttcatcgtggcacaatttttgaaccagaat |
410 |
Q |
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| T |
38026306 |
agacaacttggaggtaaagaaaacaaagaattatacgattttgaatttacaacattgtgacacaatctcttttatcgtggcacaatttttgaatcagaat |
38026405 |
T |
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| Q |
411 |
aaggagttgctactaacttataaatcatggcatgatttgcagaatcttgacacgattttgatagcgtcaaacctgaaattttgaatttaatgaagcatcg |
510 |
Q |
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| T |
38026406 |
aaggagttgctactaacttgtaaatcatggaatgatttgcagaatcttgacacggttttgatagcatcaaacctgagattttgaatttaatgaagcatca |
38026505 |
T |
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| Q |
511 |
tgccacggttttggtacatcgtggcacgatttcaagcgcccaaaaacttgtttgt-aaagccaatcatgtttctgaagcacaggttctgaattttggaga |
609 |
Q |
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| T |
38026506 |
tgccacgattttggtacatcgtggcacgatttcaggcgcccaaaaatttgtttgtaaaagccaatcatgtttctgaagcaaaggtcctgaattttggaga |
38026605 |
T |
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| Q |
610 |
tctggaagacatttttgagctgatg |
634 |
Q |
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| T |
38026606 |
tctggaagacatttttgagctgatg |
38026630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 195 - 266
Target Start/End: Original strand, 38032998 - 38033069
Alignment:
| Q |
195 |
gacacttaaaacttacaaatggttctatgattgttgcaagaggtgtggacatgttgtcatatgatgtttttt |
266 |
Q |
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| T |
38032998 |
gacacttaaaacttacaaatggttctatgattgttgcaagaggtgatgagatgttgtcatatgatgtttttt |
38033069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 39 - 122
Target Start/End: Original strand, 38032918 - 38033001
Alignment:
| Q |
39 |
gtgtgttgactttggagaggttaaattgaaattgtctaatggtaccaaattaaattttaaggatgtgaaacaatgtttcagaca |
122 |
Q |
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| T |
38032918 |
gtgtcttgattttagagaggttaatttgaaattgtctaatggtaccaaattaactcttaaggatgtgaaacaatgtttgagaca |
38033001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 286 - 339
Target Start/End: Original strand, 38033096 - 38033149
Alignment:
| Q |
286 |
ttttagtttagtccttagtgtttttagacaacttggaggtaaagaaaacaaaga |
339 |
Q |
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| T |
38033096 |
ttttagtttggttcttagtgtttttagaccgcttggaggtaaagaaaacaaaga |
38033149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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