View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9198_low_4 (Length: 548)
Name: NF9198_low_4
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_low_4 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 311 - 548
Target Start/End: Complemental strand, 41342696 - 41342459
Alignment:
| Q |
311 |
ccattcctatagtacattacaaccacaaatgcgtgtttgttcttttttaatttcatattaattgcgtcaannnnnnnctgaaataataatgtttacaata |
410 |
Q |
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| T |
41342696 |
ccattcctatagtacattacaaccacaaatgcgtgtttgttcttttttaatttcatattaattgcgtcaatttttttctgaaataataatgtttacaata |
41342597 |
T |
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| Q |
411 |
aagatcatgtggtgtttaatttaatttgatattaatacaaataaatggcagatgcgtgcagcagtatctgaagttgctacttattttccaacagcaataa |
510 |
Q |
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| T |
41342596 |
aagatcatgtggtgtttaatttaatttgatattaatacaaataaatggcagatgcgtgcagcagtatctgaagttgctacttattttccaacagcaataa |
41342497 |
T |
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| Q |
511 |
tcagtggaagaagccgagagaaggtgagttataaagct |
548 |
Q |
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| T |
41342496 |
tcagtggaagaagccgagagaaggtgagttataaagct |
41342459 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 30 - 264
Target Start/End: Complemental strand, 41342976 - 41342745
Alignment:
| Q |
30 |
atgacgtgcatgcctagattgaagtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcattattattattactaggtaaagt |
129 |
Q |
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| T |
41342976 |
atgacgtgcatgcctagattgatgtttgtaattattaattaatcatggtcattgtatgtgatctttgttggcatgcattattatta---ctaggtaaagc |
41342880 |
T |
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| Q |
130 |
atccttctgcattgagctcgtttgatagattgatgaaagctgccattgggaaaaggatcgtcgtatttttagattatgatggtaccttatcacccattgt |
229 |
Q |
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| T |
41342879 |
acccttctgcattgagctcgtttgatagattgatgaaagctgccattgggaaaaggatcgtcgtatttttagattatgatggtaccttatcacccattgt |
41342780 |
T |
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| Q |
230 |
aaatgaccctgatcgtgctttcatgtccgatgagg |
264 |
Q |
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| T |
41342779 |
aaatgaccctgatcgtgctttcatgtccgatgagg |
41342745 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 463
Target Start/End: Original strand, 18219860 - 18219898
Alignment:
| Q |
425 |
tttaatttaatttgatattaatacaaataaatggcagat |
463 |
Q |
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| T |
18219860 |
tttaatttaatttgatattaacataaataaatggcagat |
18219898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 195 - 256
Target Start/End: Complemental strand, 37980133 - 37980072
Alignment:
| Q |
195 |
tttttagattatgatggtaccttatcacccattgtaaatgaccctgatcgtgctttcatgtc |
256 |
Q |
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| T |
37980133 |
tttttggactatgatggtactttgtcacctattgtcgatgaccctgaccgtgctttcatgtc |
37980072 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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