View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9198_low_9 (Length: 459)
Name: NF9198_low_9
Description: NF9198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9198_low_9 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 327; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 12 - 440
Target Start/End: Complemental strand, 32796241 - 32795805
Alignment:
| Q |
12 |
aagcagagaagttagttgtcggatcaaaaggtgcaaattttattaatacataagttgcataaagaaagaatctctaagtatatgaagagtagtttcattc |
111 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
|
|
| T |
32796241 |
aagcagagaagttagttgtccgatcaaaaggtgtaaattttattaatacataagttgcataaagaa----tctctaagtacatgaagagtagtttcattc |
32796146 |
T |
|
| Q |
112 |
tccatccaataggggcccaaaccccacataatgtgaagaattttcaaaatatgtgaagaaccctatgatgttgaaaggacttgtttggtctagtggtttg |
211 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32796145 |
tccatcctataggggcccaaaccccacataatgtgaagaattttcaaaatatgtgaagaaccttgtgatgttgaaaggacttgtttggtctagtggtttg |
32796046 |
T |
|
| Q |
212 |
atagttgttcggtcatggggtcgattttgttcaaccacaaattatgttttaatttttatttgcaaaatgcattatatttcaaaacattaatcggcaacgg |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
32796045 |
atagttgttcggtcatggggtcgattttgttcagccacaaattatgtttaaatttttatttgcaaaatgcattatatttcaaaacattaatcgacaccgg |
32795946 |
T |
|
| Q |
312 |
ttggtttcgaacaagcaacctttaaacaaagggttacaaagtgc------------gtagtgttcggatctagaaactatttcagtatgcttttcccttt |
399 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |||||||||| |
|
|
| T |
32795945 |
ttggtttcgaacaagcaacctttcaacaaagggttacaaagtgcttatttatatatgtagtgttcggatctagaaactatttccgtatgtttttcccttt |
32795846 |
T |
|
| Q |
400 |
gctgaatggcatgagtttctctataaattgagtctacaagc |
440 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
32795845 |
gctgagtggcatgagtttctctataaattgagtctacaagc |
32795805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University