View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9199_high_4 (Length: 396)
Name: NF9199_high_4
Description: NF9199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9199_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 356
Target Start/End: Complemental strand, 45954535 - 45954180
Alignment:
| Q |
1 |
tctctcagcagaaggatttgatgttgtttatgacattaatggtatttagattcttaactctcacaccttctgtgctgaataccatttcttactattcata |
100 |
Q |
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| T |
45954535 |
tctctcagcagaaggatttgatgttgtttatgacattaatggtatttagattcttaactttcacaccttctgtgctgaataccatttcttactattcata |
45954436 |
T |
|
| Q |
101 |
ttaagaattgtgatttttcatgatatgtatctctcttcaaatttaatgattttatttggcatatgttacaggacgagaggcagaagaagttgagcccata |
200 |
Q |
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| T |
45954435 |
ttaagaattgtgatttttcatgatatgtatctctcttcaaatttaatgattttatttggcatatgttacaggacgagaggcagaagaagttgagcccata |
45954336 |
T |
|
| Q |
201 |
ttggatgctctgcctaatctagaacagtaagcagtagcaatagtttttctgatgtattataaaagtctatttcaaatataaatgcaattgtcattggtct |
300 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45954335 |
ttggatgctctgcctaatcttgaacagtaagcagtagcaatagtttttctgatgtattataaaagtctatttcaaatataaatgcaattgtcattggtct |
45954236 |
T |
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| Q |
301 |
attcattaacaagtgattagttaattatgtttaagaatgactttgattacacaaat |
356 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45954235 |
attcattaacaagtgattagttaattatgtttaagaatgactttgattacacaaat |
45954180 |
T |
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