View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9199_low_10 (Length: 338)
Name: NF9199_low_10
Description: NF9199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9199_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 282
Target Start/End: Original strand, 5533952 - 5534206
Alignment:
| Q |
19 |
taataagagtagaaatttaaattgaagtttcaagttaaagtaaaagataaaacaacattacatttattacannnnnnnaaaggcaacgttacattgtttt |
118 |
Q |
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| T |
5533952 |
taataagagtagaaatttaaattgaagtttcaagttaaagtaaaagataaaacaacattacatttttt---------taaaggcaacgttacattgtttt |
5534042 |
T |
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| Q |
119 |
agttataaaagtagtacaagaaaaggggcaattgggtcctctcatattttcaaacaataattaaaaggggacctccttccctctgctctttcctcttcct |
218 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5534043 |
agttataaaagtagtacaagaaaaggggcaatcgggtcctctcacattttcaaacaataattaaaaggggacctccttccctctgctctttcctcttcct |
5534142 |
T |
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| Q |
219 |
ctcaaacaagtacttaatcaaagacttctcatacggaatcatggctataattttaatacacaca |
282 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
5534143 |
ctcaaacaagtacttaatcaaagacttctcatacggcatcatggctataattttaatacacaca |
5534206 |
T |
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