View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9199_low_2 (Length: 550)
Name: NF9199_low_2
Description: NF9199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9199_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 438; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 438; E-Value: 0
Query Start/End: Original strand, 9 - 532
Target Start/End: Original strand, 2691896 - 2692433
Alignment:
| Q |
9 |
agcacagaagcttgtaaaaatctgagactcatcatcttcagaaacaatgnnnnnnnnntatatattatcaattgaa---------------ccatacatg |
93 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| |
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| T |
2691896 |
agcacagaagcttgtaaaaatctgagactcatcatcttcagaaacaatgaaaaaaaaa-atatattatcaattgaaagagttactcaagaaccatacatg |
2691994 |
T |
|
| Q |
94 |
aaaaaatagtgctagtgataaatgataattaaaattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcaccttacctaaatcagaa |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2691995 |
aaaaaatagtgctagtgataaatgataattaaaattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcaccttacctaaatcagaa |
2692094 |
T |
|
| Q |
194 |
tgatcaagacgaatatgcaatgtatttccatcgccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatacaaccaattccaatgactt |
293 |
Q |
| |
|
||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692095 |
tgagcaagacgaatatgcaatgtatttccatcaccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatacaaccaattccaatgactt |
2692194 |
T |
|
| Q |
294 |
ctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaaccacacgtgcaaagtcaggtaacttcatatacgtacgctc |
393 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
2692195 |
ctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaaccacatgtgcaaagtcaggtaacttcatatacgtacgctc |
2692294 |
T |
|
| Q |
394 |
caagaaaccatcctcgccaaaactaccattactctgatcacccttcaatgctgtgatcctcgtacaaccacctgacaaattcccctcatcccatagttca |
493 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2692295 |
caagaaaccatcctcgccaaaactaccattactctgattacccttcaatgctgtgatcctcgtacaaccacctgacaaattcccctcatcccatagttca |
2692394 |
T |
|
| Q |
494 |
aacccttgtaagcaactacaaatagccgaacccaacact |
532 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2692395 |
aacccttgtaagcaactacaaatagccgaacccaacact |
2692433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 179 - 526
Target Start/End: Original strand, 2699779 - 2700126
Alignment:
| Q |
179 |
ttacctaaatcagaatgatcaagacgaatatgcaatgtatttccatcgccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatacaac |
278 |
Q |
| |
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|||||||||||||||| | | |||||||| |||| | ||||| || ||| ||| ||| ||| ||| ||||||||||||||||||||||| |||||||| |
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| T |
2699779 |
ttacctaaatcagaataagcgagacgaatgtgcagagcgtttccttctccatgttgaaagtgtagaatatcaaccaaatctccataccaaaccatacaac |
2699878 |
T |
|
| Q |
279 |
caattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaatcattagtaacaaccacacgtgcaaagtcaggtaactt |
378 |
Q |
| |
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| T |
2699879 |
caattccaataacttctgcataagcagtacaagaaccattctgtaaacaattacctttacaatctttcgtatcaaccacacgcgcaaaatcaggtaactt |
2699978 |
T |
|
| Q |
379 |
catatacgtacgctccaagaaaccatcctcgccaaaactaccattactctgatcacccttcaatgctgtgatcctcgtacaaccacctgacaaattcccc |
478 |
Q |
| |
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|||| | |||| |||| ||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||| |||| |||| ||||||||||| | |
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| T |
2699979 |
catactcccacgcaccaaaaaaccatcctcaccaaaactaccattcctctgatcacccttcaatgctgtcatcctcctacatccacttgacaaattcctc |
2700078 |
T |
|
| Q |
479 |
tcatcccatagttcaaacccttgtaagcaactacaaatagccgaaccc |
526 |
Q |
| |
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| |||| ||||||||||||| ||||||| ||||||||||||||||| |
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|
| T |
2700079 |
ttatccttcagttcaaacccttttaagcaattacaaatagccgaaccc |
2700126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 213; Significance: 1e-116; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 126 - 526
Target Start/End: Original strand, 14521101 - 14521501
Alignment:
| Q |
126 |
aattgaagttccatatacatggaaacaaagcttaaggaaccctttgaagcaccttacctaaatcagaatgatcaagacgaatatgcaatgtatttccatc |
225 |
Q |
| |
|
|||||||| || |||||||||||||||||||| |||||||||||||| | | ||||||||||||||| ||| |||||||||||| || | |||||| || |
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|
| T |
14521101 |
aattgaagatcaatatacatggaaacaaagctaaaggaaccctttgatgtatcttacctaaatcagactgagcaagacgaatatataacgaatttccttc |
14521200 |
T |
|
| Q |
226 |
gccacgttcaaactgttgaacatcaaccaaatctccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaa |
325 |
Q |
| |
|
| ||| | || ||||||||||| ||||||||||||| ||||| |||||||||||||||| | ||||||||||||||||||||||||| |||||||||| |
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|
| T |
14521201 |
atcgcgtcctaagtgttgaacatcgaccaaatctccatgccaaaccatacaaccaattccagttacttctgcataagcagtacaagaagcattctccaaa |
14521300 |
T |
|
| Q |
326 |
caattaccttcacaatcattagtaacaaccacacgtgcaaagtcaggtaacttcatatacgtacgctccaagaaaccatcctcgccaaaactaccattac |
425 |
Q |
| |
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||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||| | | || | |
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|
| T |
14521301 |
caattaccttcacaatccttagtatcaaccacacgtgcaaagtcgggtaacttcatactcgtacgctcaaagaaaccatcctcgtcaaatccatcacttg |
14521400 |
T |
|
| Q |
426 |
tctgatcacccttcaatgctgtgatcctcgtacaaccacctgacaaattcccctcatcccatagttcaaacccttgtaagcaactacaaatagccgaacc |
525 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |||| |||||||||| ||| |||| |||||||||||||||||||||||||||||||||| |||| |
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|
| T |
14521401 |
tctgatcacccttcaatgctgtcttcctcgtacatccacttgacaaattctccttatcctttagttcaaacccttgtaagcaactacaaatagcccaacc |
14521500 |
T |
|
| Q |
526 |
c |
526 |
Q |
| |
|
| |
|
|
| T |
14521501 |
c |
14521501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 241 - 342
Target Start/End: Complemental strand, 36289336 - 36289235
Alignment:
| Q |
241 |
ttgaacatcaaccaaatctccataccaaagcatacaaccaattccaatgacttctgcataagcagtacaagaagtattctccaaacaattaccttcacaa |
340 |
Q |
| |
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||||| |||||| || || |||| ||||| |||||| ||||||||||| | | | |||| |||||||||||| |||||| || |||||| ||||||||| |
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| T |
36289336 |
ttgaaaatcaactaactccccatgccaaaccatacacccaattccaatagcatttacataggcagtacaagaactattcttcagacaatttccttcacaa |
36289237 |
T |
|
| Q |
341 |
tc |
342 |
Q |
| |
|
|| |
|
|
| T |
36289236 |
tc |
36289235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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