View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9199_low_6 (Length: 516)
Name: NF9199_low_6
Description: NF9199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9199_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 452; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 452; E-Value: 0
Query Start/End: Original strand, 1 - 501
Target Start/End: Complemental strand, 43924244 - 43923744
Alignment:
| Q |
1 |
taataataataatttgagaaaatagcattgctgaatatcatcccatgtgttagtgtcctttctgtgttgaaaccgccatgtgtcggtgtcggataccata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43924244 |
taataataataatttgagaaaatagcattgctgattatgatcacatgtgttagtgtcctttctttgttgaaaccgccatgtgtcggtgtcggataccata |
43924145 |
T |
|
| Q |
101 |
ccacacacctttgatcagagatgcgttgatcctaaggtagttcggatcatttataaattccaactaaacataattatcttcattaattgnnnnnnnctct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
43924144 |
ccacacacctttgatcagagatgcgttgatcctaaggtggttcggatcatttataaattccaactaaacataattatcttcattaattgtttttttctct |
43924045 |
T |
|
| Q |
201 |
cttaattattaggaatcagagtggcttagggttactttacataaatggttggatgatgaatactgtcctgaggaaacaaatgtggagataagcagagttg |
300 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43924044 |
cataattattaggaatcagagtggcttagggttactttacataaatggttggatgatgaatactgtcctgaggaaacaaatgtggagataagcagagttg |
43923945 |
T |
|
| Q |
301 |
ctgcaaaatcctactacaattctttgatacggaaacaagctgatttagctgacattttgttgaatatggcacgtgaattggaaaccatttcttataagga |
400 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43923944 |
ctgcaaaatcctactataattctttgatacggaaacaagctgatttagctgacattttgttgaatatggcacgtgaattggaaaccatttcttataagga |
43923845 |
T |
|
| Q |
401 |
aagttttcatggggcatacacatctgcaaatgcggctgtaaacctaattgcgcagcggattgaacaattatgccacccaaattaaattccatagctccac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43923844 |
aagttttcatggggcatacacatctgcaaatgcggctgtaaacctaattgcgcagcggattgaacaattatgccacccaaattaaattccatagctccac |
43923745 |
T |
|
| Q |
501 |
a |
501 |
Q |
| |
|
| |
|
|
| T |
43923744 |
a |
43923744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University