View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9199_low_7 (Length: 501)

Name: NF9199_low_7
Description: NF9199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9199_low_7
NF9199_low_7
[»] chr4 (14 HSPs)
chr4 (59-415)||(37615123-37615479)
chr4 (72-282)||(10353515-10353725)
chr4 (59-285)||(42953853-42954079)
chr4 (67-269)||(9993214-9993416)
chr4 (84-236)||(4525036-4525188)
chr4 (67-172)||(10426346-10426454)
chr4 (112-236)||(20669093-20669217)
chr4 (447-491)||(37615477-37615521)
chr4 (88-201)||(55298206-55298319)
chr4 (88-198)||(42169466-42169576)
chr4 (88-201)||(23873920-23874033)
chr4 (88-167)||(33312982-33313061)
chr4 (88-167)||(12776685-12776764)
chr4 (84-202)||(22540250-22540368)
[»] chr8 (14 HSPs)
chr8 (67-282)||(43254089-43254304)
chr8 (59-284)||(24793306-24793530)
chr8 (59-285)||(11394706-11394932)
chr8 (84-209)||(7555026-7555151)
chr8 (88-167)||(16421487-16421566)
chr8 (83-258)||(30501546-30501721)
chr8 (88-186)||(43613523-43613621)
chr8 (88-167)||(2871774-2871853)
chr8 (110-168)||(30261293-30261351)
chr8 (110-172)||(39483213-39483275)
chr8 (88-168)||(6900479-6900559)
chr8 (87-147)||(8639329-8639389)
chr8 (86-186)||(23941898-23941998)
chr8 (86-186)||(40467407-40467507)
[»] chr2 (24 HSPs)
chr2 (72-278)||(3119534-3119740)
chr2 (72-282)||(11234827-11235037)
chr2 (83-282)||(9669369-9669568)
chr2 (67-282)||(32243965-32244180)
chr2 (67-172)||(37139264-37139369)
chr2 (209-285)||(10597421-10597497)
chr2 (92-236)||(4040456-4040600)
chr2 (67-158)||(38443846-38443937)
chr2 (88-234)||(26490664-26490810)
chr2 (88-198)||(22052210-22052320)
chr2 (59-146)||(6267440-6267527)
chr2 (88-171)||(31594137-31594220)
chr2 (88-201)||(26681464-26681577)
chr2 (59-157)||(7213006-7213104)
chr2 (86-186)||(8066685-8066785)
chr2 (88-167)||(33547455-33547534)
chr2 (116-198)||(36803523-36803605)
chr2 (88-201)||(9949708-9949821)
chr2 (98-186)||(21614220-21614308)
chr2 (87-186)||(35487427-35487526)
chr2 (88-198)||(13549707-13549817)
chr2 (110-204)||(31774289-31774383)
chr2 (88-169)||(35694216-35694297)
chr2 (119-171)||(6849216-6849268)
[»] chr7 (18 HSPs)
chr7 (72-282)||(31025865-31026072)
chr7 (92-282)||(42565416-42565606)
chr7 (92-282)||(13554541-13554731)
chr7 (83-282)||(47105973-47106172)
chr7 (59-285)||(19728041-19728267)
chr7 (59-284)||(43021860-43022085)
chr7 (84-267)||(26078773-26078956)
chr7 (84-267)||(26102560-26102743)
chr7 (112-198)||(5021019-5021105)
chr7 (88-191)||(9975416-9975519)
chr7 (112-237)||(37724293-37724419)
chr7 (89-171)||(45235534-45235616)
chr7 (92-147)||(43571740-43571795)
chr7 (88-167)||(13439636-13439715)
chr7 (67-126)||(18219314-18219373)
chr7 (86-129)||(19048175-19048218)
chr7 (119-171)||(36363137-36363189)
chr7 (87-191)||(38780704-38780808)
[»] chr3 (20 HSPs)
chr3 (69-282)||(20198458-20198672)
chr3 (71-282)||(53946263-53946474)
chr3 (67-278)||(10867261-10867473)
chr3 (76-252)||(27497333-27497509)
chr3 (59-265)||(14868165-14868371)
chr3 (154-282)||(27969050-27969178)
chr3 (85-246)||(54440512-54440673)
chr3 (84-153)||(27968818-27968887)
chr3 (110-236)||(9163538-9163664)
chr3 (112-236)||(19824204-19824328)
chr3 (88-201)||(25873556-25873669)
chr3 (87-186)||(38926366-38926465)
chr3 (88-185)||(9319595-9319692)
chr3 (87-191)||(36708467-36708571)
chr3 (87-198)||(26009624-26009735)
chr3 (92-167)||(29308994-29309069)
chr3 (88-198)||(2813947-2814057)
chr3 (113-171)||(48974410-48974468)
chr3 (113-172)||(23873749-23873809)
chr3 (95-167)||(28675407-28675479)
[»] chr1 (16 HSPs)
chr1 (83-285)||(49265324-49265526)
chr1 (83-282)||(20795246-20795445)
chr1 (83-278)||(39429856-39430051)
chr1 (67-282)||(41503263-41503479)
chr1 (59-152)||(6890901-6890994)
chr1 (59-152)||(6892747-6892840)
chr1 (108-246)||(44929839-44929976)
chr1 (112-204)||(16873933-16874025)
chr1 (87-191)||(34854094-34854198)
chr1 (88-201)||(37530147-37530260)
chr1 (236-282)||(17827032-17827078)
chr1 (88-201)||(32353741-32353854)
chr1 (87-186)||(37139585-37139684)
chr1 (88-167)||(48073910-48073989)
chr1 (88-167)||(3692210-3692289)
chr1 (110-203)||(30971050-30971143)
[»] chr6 (15 HSPs)
chr6 (72-282)||(13085106-13085316)
chr6 (59-282)||(33572563-33572786)
chr6 (72-190)||(6284281-6284399)
chr6 (112-237)||(33804388-33804513)
chr6 (88-201)||(8873270-8873383)
chr6 (87-186)||(31297603-31297702)
chr6 (87-192)||(24749230-24749335)
chr6 (88-167)||(15673408-15673487)
chr6 (87-186)||(23066509-23066608)
chr6 (88-147)||(32326836-32326895)
chr6 (87-171)||(4406594-4406678)
chr6 (88-167)||(13755048-13755127)
chr6 (88-186)||(10008699-10008797)
chr6 (88-198)||(23347913-23348023)
chr6 (83-204)||(11468166-11468287)
[»] chr5 (15 HSPs)
chr5 (59-285)||(4399431-4399657)
chr5 (59-285)||(8571484-8571710)
chr5 (59-284)||(19513826-19514051)
chr5 (59-285)||(17737715-17737936)
chr5 (120-282)||(13916889-13917051)
chr5 (59-172)||(3199600-3199713)
chr5 (112-236)||(35123115-35123239)
chr5 (88-191)||(6264652-6264755)
chr5 (88-198)||(32917900-32918010)
chr5 (88-201)||(34480539-34480652)
chr5 (115-163)||(15005782-15005830)
chr5 (173-238)||(3199516-3199581)
chr5 (117-198)||(15500093-15500174)
chr5 (88-201)||(34858137-34858250)
chr5 (131-171)||(31862219-31862259)
[»] scaffold0707 (1 HSPs)
scaffold0707 (59-282)||(1006-1229)
[»] scaffold0308 (1 HSPs)
scaffold0308 (112-198)||(16269-16355)
[»] scaffold0112 (1 HSPs)
scaffold0112 (87-172)||(16075-16159)


Alignment Details
Target: chr4 (Bit Score: 263; Significance: 1e-146; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 59 - 415
Target Start/End: Original strand, 37615123 - 37615479
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37615123 caaagtcaagaggaaacaacctccggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 37615222  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    || ||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37615223 taactttcagccgcactaacgataacaacttaattttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 37615322  T
Q  259 aatcacccaagtagtcaaaagccatatagcattggaatgaatgaaatttattttgctgtgnnnnnnnngataatttttaaggaatagtttagatttgata 358  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||        |||||||||| |||||||||||||||||||||    
T  37615323 aatcatccaagtagtcaaaagccagatagcattggaatgaatgaaatttattttgctgtgaaaaaaaagataattttt-aggaatagtttagatttgata 37615421  T
Q  359 agaaaatattttgactgtattt-nnnnnnnnntgatccagttggtttattttttaaga 415  Q
    ||||||||||||||||||||||          ||||||||||||||||||||||||||    
T  37615422 agaaaatattttgactgtatttaaaaaaaaaatgatccagttggtttattttttaaga 37615479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 10353515 - 10353725
Alignment:
Q  72 aaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||  |||||||| ||||||||||    
T  10353515 aaacaccctccggtggttagccaatgcccaaacaaaccaaaggacttgaccaccacatctgagttccgaaaacaaaagttacatttttaactttcagcca 10353614  T
Q  172 cactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagta 271  Q
    |||||||||| |||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  10353615 cactaacgatgacaacttaattttatctagcaatctaggagcctcagttacaacatttttaaacaaacgattattacgctcactccaaatcacccaagta 10353714  T
Q  272 gtcaaaagcca 282  Q
    |||||||||||    
T  10353715 gtcaaaagcca 10353725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 59 - 285
Target Start/End: Complemental strand, 42954079 - 42953853
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| ||||||||||||||| |||| |||||||| ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  42954079 caaagtcaagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatttgagttccaaaaacaaaagtggcatttt 42953980  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    || ||||||||||| |||| ||||||||||||||||||||||| ||||| ||| ||||||| |  ||||||||||||| |||||| ||||||||| ||||    
T  42953979 tatctttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacatttttaaacatacgattattacgctcattcca 42953880  T
Q  259 aatcacccaagtagtcaaaagccatat 285  Q
    |||||||||||  |||| |||||||||    
T  42953879 aatcacccaagatgtcagaagccatat 42953853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 131; E-Value: 9e-68
Query Start/End: Original strand, 67 - 269
Target Start/End: Complemental strand, 9993416 - 9993214
Alignment:
Q  67 agaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttc 166  Q
    |||||||||||||||  ||| |||| |||||||||||||| | | |||||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  9993416 agaggaaacaacctccagtgattagtcaatgcccagacaagctataggacttgaccaccacatctgagttccaaaaacaaaagtgacatttttagttttc 9993317  T
Q  167 agccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcaccc 266  Q
    ||||||  ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||||||||||  ||||||||| |||||| |||||    
T  9993316 agccactataacgataacaacttaattttatcaagcagtctaggagcctcggttaccacatttttaaacaaacgatgattacgctcattccaaaccaccc 9993217  T
Q  267 aag 269  Q
    |||    
T  9993216 aag 9993214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 84 - 236
Target Start/End: Complemental strand, 4525188 - 4525036
Alignment:
Q  84 gtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataa 183  Q
    ||||||||||||||||||||||| ||| |||||||||||||||| ||| |||  |||||||||||||||| |||||||||||||| ||| |||| |||||    
T  4525188 gtggttagccaatgcccagacaagccataggacttgaccaccacgtcttagtatcaaaaacaaaagtggcttttttagctttcagtcacgctaaagataa 4525089  T
Q  184 caacttaattttatcaagcaatctgggagcctcggttacaacatttttaaaca 236  Q
    ||| ||||| |||||||||||||| ||  ||||  |||||||||| |||||||    
T  4525088 caatttaatcttatcaagcaatctagggacctcaattacaacattattaaaca 4525036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 67 - 172
Target Start/End: Complemental strand, 10426454 - 10426346
Alignment:
Q  67 agaggaaacaacctctggtggttag---ccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagct 163  Q
    |||||||||||||||  ||||||||   |||| ||||| ||||  || |||||||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  10426454 agaggaaacaacctccagtggttaggcgccaacgcccaaacaagtcataggacttgaccaccacatctgagttcaaaaaataaaagtgacatttttagct 10426355  T
Q  164 ttcagccac 172  Q
    |||| ||||    
T  10426354 ttcacccac 10426346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 20669093 - 20669217
Alignment:
Q  112 aggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagcaatctggga 211  Q
    |||||||||||||||||||||||| ||| |||||||  |||| |||||||| |||| |||| |||| |||||||| ||||| ||||| | ||| || ||     
T  20669093 aggacttgaccaccacatctgagtaccataaacaaacatggcttttttagccttcatccaccctaatgataacaatttaatcttatccaacaacctcggg 20669192  T
Q  212 gcctcggttacaacatttttaaaca 236  Q
     | || ||||||||||| |||||||    
T  20669193 acgtccgttacaacattattaaaca 20669217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 447 - 491
Target Start/End: Original strand, 37615477 - 37615521
Alignment:
Q  447 agagaagcttggctaatctatttcacattggaccacactttgatg 491  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  37615477 agagaagcttggctaatctatttcacattggaccacactttgatg 37615521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 55298206 - 55298319
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || || ||||||||||||| |||  |||  || ||||||    
T  55298206 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaac 55298305  T
Q  188 ttaattttatcaag 201  Q
    ||||| ||||||||    
T  55298306 ttaatcttatcaag 55298319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 42169576 - 42169466
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    |||||||||  ||| |||| | ||||| |||||||||||| |||| || |||||||||||  || ||| ||| |||||||||||  |||||||||||||     
T  42169576 ttagccaatagccaaacaagctaaagggcttgaccaccacctctgcgtgccaaaaacaaacatgacatcttttgctttcagccaacctaacgataacaat 42169477  T
Q  188 ttaattttatc 198  Q
    |||| ||||||    
T  42169476 ttaactttatc 42169466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 23874033 - 23873920
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || || ||||||||||||| |||  |||  || |||| |    
T  23874033 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagc 23873934  T
Q  188 ttaattttatcaag 201  Q
    ||||| ||||||||    
T  23873933 ttaatcttatcaag 23873920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 33312982 - 33313061
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    |||||||||||||| |||||| | ||| ||||||||||||  |||||| ||||||||||||||  | |||||| ||||||    
T  33312982 ttagccaatgcccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaagtaacttttttaactttca 33313061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 12776764 - 12776685
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || ||  ||||||||||||    
T  12776764 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagctcttttagctttca 12776685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 84 - 202
Target Start/End: Original strand, 22540250 - 22540368
Alignment:
Q  84 gtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataa 183  Q
    |||||||||||||||| | ||||  |||||| ||| |||||||| ||||| | |||||||||||  | || ||||||||  |||| |||||||| || ||    
T  22540250 gtggttagccaatgcctaaacaagtcaaagggcttaaccaccacttctgaataccaaaaacaaatatagcttttttagccgtcagtcacactaaggacaa 22540349  T
Q  184 caacttaattttatcaagc 202  Q
      | ||||| |||||||||    
T  22540350 agatttaatcttatcaagc 22540368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 67 - 282
Target Start/End: Complemental strand, 43254304 - 43254089
Alignment:
Q  67 agaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttc 166  Q
    |||||||| | |||| ||||||||||||||||||| ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43254304 agaggaaaaaccctccggtggttagccaatgcccaaacaagtcaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttc 43254205  T
Q  167 agccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcaccc 266  Q
    |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43254204 agccacactaacgataacaatttaattttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcaccc 43254105  T
Q  267 aagtagtcaaaagcca 282  Q
    ||||||||||||||||    
T  43254104 aagtagtcaaaagcca 43254089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 59 - 284
Target Start/End: Original strand, 24793306 - 24793530
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| ||||||||||||||| |||| |||||||| ||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  24793306 caaagtcaagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctgagttccaaaa-caaaagtggcatttt 24793404  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    |||| |||| |||| |||| ||||||||||||||||||||||| ||||| ||| ||||||| |  |||||||||||||||||| | ||||||||| ||||    
T  24793405 tagccttcaaccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacatttttaaacaaacgaatattacgctcattcca 24793504  T
Q  259 aatcacccaagtagtcaaaagccata 284  Q
    |||||||||||  |||| ||||||||    
T  24793505 aatcacccaagatgtcagaagccata 24793530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 59 - 285
Target Start/End: Complemental strand, 11394932 - 11394706
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| |||| |||||||||| |||| |||||||| ||||| |||||| | |||||||||||||||||||||||||||||||| |||||||  |||||    
T  11394932 caaagtcaagagaaaacaacctccggtgattagccaaagcccaaacaaacgataggacttgaccaccacatctgagttccaaaaataaaagtgatatttt 11394833  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    ||||||||||||||||||| ||||||||||||||||||||||| ||||| ||| ||||||| |  |||||||||||||||||| | |||||| || ||||    
T  11394832 tagctttcagccacactaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacatttttaaacaaacgaatattacgcccattcca 11394733  T
Q  259 aatcacccaagtagtcaaaagccatat 285  Q
    |||||||||||  |||| |||||||||    
T  11394732 aatcacccaagatgtcagaagccatat 11394706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 84 - 209
Target Start/End: Original strand, 7555026 - 7555151
Alignment:
Q  84 gtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataa 183  Q
    |||||||||| || | || |||| ||||| |||||||||||||| || |||| ||||| |||||  || |  ||||||||||||||||  ||||||||||    
T  7555026 gtggttagccgattctcaaacaagccaaatgacttgaccaccacctccgagtaccaaatacaaacatgactattttagctttcagccatcctaacgataa 7555125  T
Q  184 caacttaattttatcaagcaatctgg 209  Q
    ||| ||||| ||||||||||||||||    
T  7555126 caatttaatcttatcaagcaatctgg 7555151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 16421566 - 16421487
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||||||||||||||| || || |||||||||||||    
T  16421566 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttca 16421487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 83 - 258
Target Start/End: Original strand, 30501546 - 30501721
Alignment:
Q  83 ggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgata 182  Q
    |||||||| |||||||| | |||| |||| || |||||||||||| | ||||| |||||||||||  |||| ||||||||  ||| |||| |||| || |    
T  30501546 ggtggttaaccaatgcctaaacaagccaaggggcttgaccaccacctatgagtaccaaaaacaaacatggcttttttagccgtcaaccacgctaaggaca 30501645  T
Q  183 acaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    |  | ||||| ||||||||||| || ||  | || |||| |||||| ||||||| ||| || ||||| ||| ||||    
T  30501646 aagatttaatcttatcaagcaacctaggtacatcagttataacattattaaacagacggttattacgttcattcca 30501721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 43613621 - 43613523
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    |||||| |||||||||||| | ||||| || |||||||||||||| || ||| | | |||  ||||||||||||| ||||||||| || | ||||||||    
T  43613621 ttagcctatgcccagacaagctaaagggctagaccaccacatctgggtgccatacataaacatggcatttttagccttcagccaccctgaagataacaa 43613523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 2871774 - 2871853
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||||| |||| |||||| | |||  |||||||||||  |||||| ||||||||||| || || |||||||||||||    
T  2871774 ttagccaatacccaaacaaacaagagggtttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttca 2871853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 168
Target Start/End: Original strand, 30261293 - 30261351
Alignment:
Q  110 aaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcag 168  Q
    ||||| ||||||||||||  |||||| |||||||||||  || ||||||||||||||||    
T  30261293 aaagggcttgaccaccactactgagtaccaaaaacaaatatgacatttttagctttcag 30261351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 39483275 - 39483213
Alignment:
Q  110 aaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccac 172  Q
    ||||| || ||||||||  ||||||| ||||||| ||||||| | ||||||||||||||||||    
T  39483275 aaagggctcgaccaccaagtctgagtaccaaaaataaaagtgacttttttagctttcagccac 39483213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 168
Target Start/End: Original strand, 6900479 - 6900559
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcag 168  Q
    |||||||||||||| |||| | |||||  ||| ||||||| |||| || |||||||||||  || ||||||| ||||||||    
T  6900479 ttagccaatgcccaaacaagcaaaagggtttgtccaccacctctgcgtgccaaaaacaaacatgacatttttggctttcag 6900559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 147
Target Start/End: Original strand, 8639329 - 8639389
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaa 147  Q
    ||||||||||||||| |||||| ||||| || ||||||||| |||| ||  ||||||||||    
T  8639329 gttagccaatgcccaaacaaactaaagggctcgaccaccacctctgcgtatcaaaaacaaa 8639389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 23941898 - 23941998
Alignment:
Q  86 ggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataaca 185  Q
    |||||| |||||||||||||| | ||  | |||||||||||  |||| || ||| |||||||  | || |||||||||||||| ||| |||| |||||||    
T  23941898 ggttagtcaatgcccagacaatctaacaggcttgaccaccatctctgcgtaccataaacaaacattgcctttttagctttcagtcactctaaagataaca 23941997  T
Q  186 a 186  Q
    |    
T  23941998 a 23941998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 86 - 186
Target Start/End: Original strand, 40467407 - 40467507
Alignment:
Q  86 ggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataaca 185  Q
    ||||||||||||||||||||| | || || |||||| ||||  |||| || ||| |||||||  | |  || ||||||||||||||| |||| |||||||    
T  40467407 ggttagccaatgcccagacaatctaacgggcttgactaccatctctgcgtaccataaacaaacattgtcttcttagctttcagccactctaaagataaca 40467506  T
Q  186 a 186  Q
    |    
T  40467507 a 40467507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 175; Significance: 5e-94; HSPs: 24)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 175; E-Value: 5e-94
Query Start/End: Original strand, 72 - 278
Target Start/End: Original strand, 3119534 - 3119740
Alignment:
Q  72 aaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||| |||| ||||||||||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  3119534 aaacaccctccggtggttagccaatgcccaaacaagccaaatgacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttccgcca 3119633  T
Q  172 cactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagta 271  Q
    |||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3119634 cactaacgataacaacttaattttatcaagcaatctaggagtctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagta 3119733  T
Q  272 gtcaaaa 278  Q
    |||||||    
T  3119734 gtcaaaa 3119740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 72 - 282
Target Start/End: Complemental strand, 11235037 - 11234827
Alignment:
Q  72 aaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||||    
T  11235037 aaacaccctccggtggttagccaatgcccaaacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagttatatttttagctttcagcca 11234938  T
Q  172 cactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagta 271  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| ||||| ||||||||||||| |||||||    
T  11234937 cactaacgataacaacttaattttatcaagcaatctaggagcctcagttacaacatttttaaacaaacgattattacgatcactccaaatcaaccaagta 11234838  T
Q  272 gtcaaaagcca 282  Q
    || ||||||||    
T  11234837 gttaaaagcca 11234827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 83 - 282
Target Start/End: Complemental strand, 9669568 - 9669369
Alignment:
Q  83 ggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgata 182  Q
    |||| ||| |||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  9669568 ggtgattaaccaatgcccaaacaaactaaaggacatgaccaccacatatgagttccaaaaacaaaagtggcctttttagctttaagccacactaacgata 9669469  T
Q  183 acaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaagcca 282  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9669468 acaacttaattttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattgttaggctcactccaaatcacccaagtagtcaaaagcca 9669369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 67 - 282
Target Start/End: Complemental strand, 32244180 - 32243965
Alignment:
Q  67 agaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttc 166  Q
    |||||||||||||||  ||| ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  32244180 agaggaaacaacctcgagtgattagccaatgcccagacaagccataggacttgaccaccacatctgagtttcaaaaacaaaagtggcatttttagctttc 32244081  T
Q  167 agccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcaccc 266  Q
    |||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| |||||||||||||||||||||||||||||| |||||| |||||    
T  32244080 agccacgctaacgataacaacttaattttatcaagcaatctaggagtctcggttaccacatttttaaacaaacgattgttacgctcattccaaaccaccc 32243981  T
Q  267 aagtagtcaaaagcca 282  Q
    |||  | |||||||||    
T  32243980 aagatggcaaaagcca 32243965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 67 - 172
Target Start/End: Original strand, 37139264 - 37139369
Alignment:
Q  67 agaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttc 166  Q
    |||||||||| |||| |||| |||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||||||||||||||    
T  37139264 agaggaaacatcctccggtgattagtcaatgcccagacaaaccataggacttgaccaccacatctgagttccaaaaacaaaaatgacatttttagctttc 37139363  T
Q  167 agccac 172  Q
    ||||||    
T  37139364 agccac 37139369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 10597421 - 10597497
Alignment:
Q  209 ggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaagccatat 285  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  10597421 ggagcctcagttacaacatttttaaacaaacgattattacgctcactccaaatcacccaagtagtcaaaagccatat 10597497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 4040600 - 4040456
Alignment:
Q  92 ccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaa 191  Q
    |||||||| | ||||  ||||||||||||||||||| | | ||| ||||||||||| ||||| |||||||||||||||||| ||||||||||||  ||||    
T  4040600 ccaatgcctacacaagtcaaaggacttgaccaccacctatcagtaccaaaaacaaatgtggcttttttagctttcagccacgctaacgataacagtttaa 4040501  T
Q  192 ttttatcaagcaatctgggagcctcggttacaacatttttaaaca 236  Q
    | |||||||| || || ||| | |||||||||||||| |||||||    
T  4040500 tcttatcaagtaacctaggaacatcggttacaacattattaaaca 4040456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 67 - 158
Target Start/End: Complemental strand, 38443937 - 38443846
Alignment:
Q  67 agaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||||||| |||  ||| ||||||||| ||||||||||| | |||||||||||||||||||||||||||||||||||||||| ||||||    
T  38443937 agaggaaacaatctccagtgattagccaatacccagacaaactataggacttgaccaccacatctgagttccaaaaacaaaagtgacatttt 38443846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 88 - 234
Target Start/End: Complemental strand, 26490810 - 26490664
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||| ||||||| |||||| ||||| ||||||| ||||| |||||  || | |||||||||||||||||  | || ||||||||     
T  26490810 ttagccaatacccaaacaagccaaagggcttgactaccacttctgagtaccaaatacaaacatgacttttttagctttcagccatgccaaagataacaat 26490711  T
Q  188 ttaattttatcaagcaatctgggagcctcggttacaacatttttaaa 234  Q
    ||||| ||||||||||| |||||||  || ||||||||||| |||||    
T  26490710 ttaatcttatcaagcaacctgggagtatcagttacaacattattaaa 26490664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 22052210 - 22052320
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  ||||||||||||||||||||| || ||||||||||| |||||  |||| || ||||||    
T  22052210 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaaagacaacaac 22052309  T
Q  188 ttaattttatc 198  Q
    ||||| |||||    
T  22052310 ttaatcttatc 22052320  T

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Target: chr2; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 59 - 146
Target Start/End: Original strand, 6267440 - 6267527
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaa 146  Q
    ||||||| |||| ||||||||||  ||| ||| |||||||| | |||||||| | |||||||||||||||||||||||||||||||||    
T  6267440 caaagtcaagagaaaacaacctccagtgattaaccaatgcctaaacaaaccatatgacttgaccaccacatctgagttccaaaaacaa 6267527  T

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Target: chr2; HSP #12
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 88 - 171
Target Start/End: Original strand, 31594137 - 31594220
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||||||||||||||| || || |||||||||||||||||    
T  31594137 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagcca 31594220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 26681464 - 26681577
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | |||  |||||||||||   ||||||||||||||||| || || |||||||||||||||||  |||| || ||||||    
T  26681464 ttagccaatacccaaacaaacaagagggtttgaccaccactgttgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacaacaac 26681563  T
Q  188 ttaattttatcaag 201  Q
    ||||  ||||||||    
T  26681564 ttaaccttatcaag 26681577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 59 - 157
Target Start/End: Complemental strand, 7213104 - 7213006
Alignment:
Q  59 caaagtcgagaggaaa-caacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcattt 157  Q
    ||||||| |||||||| |||| |  ||| ||||||||||||||| |||| |||||| |||||||||||| || | |||| ||||||||||||||||||||    
T  7213104 caaagtcaagaggaaaacaactttcggtagttagccaatgcccaaacaagccaaag-acttgaccaccatatttaagtttcaaaaacaaaagtggcattt 7213006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 8066785 - 8066685
Alignment:
Q  86 ggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataaca 185  Q
    |||||||||||||| |||||| | || || |||||||||||| |||| || |||||||||||  | |  |||||| ||||||||||| |||| |||||||    
T  8066785 ggttagccaatgcctagacaatctaacgggcttgaccaccacctctgcgtaccaaaaacaaacattgtctttttaactttcagccaccctaaagataaca 8066686  T
Q  186 a 186  Q
    |    
T  8066685 a 8066685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 33547455 - 33547534
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || || |||||||||||||    
T  33547455 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttca 33547534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 116 - 198
Target Start/End: Original strand, 36803523 - 36803605
Alignment:
Q  116 cttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatc 198  Q
    |||||||||||| |||| || |||||||||||  || ||||||| |||||||||||  |||| |||||||| |||| ||||||    
T  36803523 cttgaccaccacctctgcgtgccaaaaacaaacatgacattttttgctttcagccaacctaatgataacaatttaactttatc 36803605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 9949821 - 9949708
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  ||||||  |||||||||| || || ||||||||||| |||||  |||| || | ||||    
T  9949821 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtgtcaaaaacaaaggtagcttttttagcttttagccaacctaaagacatcaac 9949722  T
Q  188 ttaattttatcaag 201  Q
    ||||  ||||||||    
T  9949721 ttaaccttatcaag 9949708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 98 - 186
Target Start/End: Original strand, 21614220 - 21614308
Alignment:
Q  98 cccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    ||||||||| | ||||| || |||||||||||||| || ||||| |||||   |||||||||||| ||||||||| |||  ||||||||    
T  21614220 cccagacaagctaaagggctagaccaccacatctgggtgccaaacacaaacacggcatttttagccttcagccaccctagagataacaa 21614308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 35487427 - 35487526
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    |||||||||||||||| ||| | || || |||||||||||| ||||  | ||| ||||||   | |||||||||||||| |||||| |||| ||||||||    
T  35487427 gttagccaatgcccaggcaatctaacgggcttgaccaccacctctgcataccataaacaagcatagcatttttagcttttagccaccctaaagataacaa 35487526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 13549707 - 13549817
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | |||  |||||||||||  |||||||||||||||||| || || |||||| |||| || ||  |||| || |||| |    
T  13549707 ttagccaatacccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaaggtagcttttttaactttaagtcaacctaaagacaacatc 13549806  T
Q  188 ttaattttatc 198  Q
    ||||| |||||    
T  13549807 ttaatcttatc 13549817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 110 - 204
Target Start/End: Original strand, 31774289 - 31774383
Alignment:
Q  110 aaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagcaa 204  Q
    ||||| || |||||||||  |||||||||| ||  |||| |||||||||||||||||||| |  |||| || |||| |||||  |||||||||||    
T  31774289 aaagggctagaccaccactgctgagttccataagtaaaaatggcatttttagctttcagcaatcctaaagacaacatcttaaccttatcaagcaa 31774383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 169
Target Start/End: Original strand, 35694216 - 35694297
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagc 169  Q
    |||||||||  ||| |||||| | |||  |||||||||||  |||||||||||||||||| || |  |||||||||||||||    
T  35694216 ttagccaatatccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaaggtagtttttttagctttcagc 35694297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 6849216 - 6849268
Alignment:
Q  119 gaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||||||  ||||||| |||||||||||||||||||| || ||||| |||||    
T  6849216 gaccaccatttctgagtaccaaaaacaaaagtggcattatttgcttttagcca 6849268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 169; Significance: 2e-90; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 169; E-Value: 2e-90
Query Start/End: Original strand, 72 - 282
Target Start/End: Complemental strand, 31026072 - 31025865
Alignment:
Q  72 aaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||| |||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31026072 aaacaccctccggtggttagccaatgcccaaacaagccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 31025973  T
Q  172 cactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagta 271  Q
    ||||||||||||||||||||| |||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31025972 cactaacgataacaacttaatattatcaagcaatctaggagcctcg---acaacatttttaaacaaacgattgttacgctcactccaaatcacccaagta 31025876  T
Q  272 gtcaaaagcca 282  Q
    || ||||||||    
T  31025875 gtgaaaagcca 31025865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 92 - 282
Target Start/End: Original strand, 42565416 - 42565606
Alignment:
Q  92 ccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaa 191  Q
    |||||||||| |||| | ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42565416 ccaatgcccaaacaagctaaaggacatgaccaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaacgataacaacttaa 42565515  T
Q  192 ttttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaagcca 282  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  42565516 ttttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattattacgctcactccaaatcacccaagtagtcaaaagcca 42565606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 92 - 282
Target Start/End: Complemental strand, 13554731 - 13554541
Alignment:
Q  92 ccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaa 191  Q
    |||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  13554731 ccaatgcccaaacaaactaaaggacatgaccaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaacgataacaacttaa 13554632  T
Q  192 ttttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaagcca 282  Q
    ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  13554631 ttttatcaagcaaactaggagcctcggttacaacatttttaaacaaacgattgttacgctcactccagatcacccacgtagtcaaaagcca 13554541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 83 - 282
Target Start/End: Complemental strand, 47106172 - 47105973
Alignment:
Q  83 ggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgata 182  Q
    |||| ||| |||||||||| |||| | ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || |||||||||||||    
T  47106172 ggtgattatccaatgcccaaacaagctaaaggacatgaccaccacatatgagttccaaaaacaaaagtggcatttttagctttaagtcacactaacgata 47106073  T
Q  183 acaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaagcca 282  Q
    |||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  47106072 acaatttgattttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattattacgctcactccaaatcacccaagtagtcaaaagcca 47105973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 59 - 285
Target Start/End: Original strand, 19728041 - 19728267
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| ||||||||||||||| |||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19728041 caaagtcaagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 19728140  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    |||||||||||||| |||| ||||||||||||||||||||||| ||||| ||| |||| || |  ||||||||||||||||||   ||||||||| ||||    
T  19728141 tagctttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcagtaatcacatttttaaacaaacgaaaattacgctcattcca 19728240  T
Q  259 aatcacccaagtagtcaaaagccatat 285  Q
    |||||||||||  |||| |||||||||    
T  19728241 aatcacccaagatgtcagaagccatat 19728267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 59 - 284
Target Start/End: Complemental strand, 43022085 - 43021860
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| || | ||||||| || |||| |||| ||| ||||| |||||||| |||||||||  ||||||||||||||||||||||||||||||||||||    
T  43022085 caaagtcaagggaaaacaacatccggtgattagtcaaagcccaaacaaaccataggacttgattaccacatctgagttccaaaaacaaaagtggcatttt 43021986  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    || | ||||||||| |||| ||||||||||||||||||||||| || || ||| ||||||| |  |||||||||||||||||| | || |||||| ||||    
T  43021985 taaccttcagccacgctaaagataacaacttaattttatcaagtaacctaggaacctcggtaatcacatttttaaacaaacgaatatttcgctcattcca 43021886  T
Q  259 aatcacccaagtagtcaaaagccata 284  Q
    |||||||||||  |||| ||||||||    
T  43021885 aatcacccaagatgtcagaagccata 43021860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 84 - 267
Target Start/End: Complemental strand, 26078956 - 26078773
Alignment:
Q  84 gtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataa 183  Q
    |||||||||||||||||||||||  || | |||||||||||||| ||||||| ||||||||||| ||||  |||||||||||||||||| ||||| ||||    
T  26078956 gtggttagccaatgcccagacaagtcatatgacttgaccaccacctctgagtaccaaaaacaaatgtggtttttttagctttcagccacgctaacaataa 26078857  T
Q  184 caacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcaccca 267  Q
    ||  ||||| ||||||| ||| || ||    || ||||||||||| ||||||| ||| || ||| | ||| |||| ||||||||    
T  26078856 cagtttaatcttatcaaacaacctagggatatcagttacaacattattaaacatacggttattaggatcattccacatcaccca 26078773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 84 - 267
Target Start/End: Complemental strand, 26102743 - 26102560
Alignment:
Q  84 gtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataa 183  Q
    |||||||||||||||||||||||  || | |||||||||||||| ||||||| ||||||||||| ||||  |||||||||||||||||| ||||| ||||    
T  26102743 gtggttagccaatgcccagacaagtcatatgacttgaccaccacctctgagtaccaaaaacaaatgtggtttttttagctttcagccacgctaacaataa 26102644  T
Q  184 caacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcaccca 267  Q
    ||  ||||| ||||||| ||| || ||    || ||||||||||| ||||||| ||| || ||| | ||| |||| ||||||||    
T  26102643 cagtttaatcttatcaaacaacctagggatatcagttacaacattattaaacatacggttattaggatcattccacatcaccca 26102560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 5021105 - 5021019
Alignment:
Q  112 aggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatc 198  Q
    |||||||||||||||||||||||| ||| |||||||  |||| |||||||||||||||||| |||| |||||||| ||||| |||||    
T  5021105 aggacttgaccaccacatctgagtaccataaacaaacatggcttttttagctttcagccaccctaatgataacaatttaatcttatc 5021019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 9975416 - 9975519
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    |||||||||| |||||||||| |||||||||||||||||| |||| ||  ||||||||||  || ||||| ||||||||||||||  ||| ||||||||     
T  9975416 ttagccaatgtccagacaaactaaaggacttgaccaccacctctgtgtatcaaaaacaaacatgacatttctagctttcagccaccttaaagataacaat 9975515  T
Q  188 ttaa 191  Q
    ||||    
T  9975516 ttaa 9975519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 37724419 - 37724293
Alignment:
Q  112 aggacttgaccaccacatctgagttccaaaaacaaaagtg-gcatttttagctttcagccacactaacgataacaacttaattttatcaagcaatctggg 210  Q
    |||||||||||||||||||||||| ||| |||||||  || |  |||||||||||||||||| |||| |||||||| ||||| ||||| | ||| |||||    
T  37724419 aggacttgaccaccacatctgagtaccataaacaaacatgagtttttttagctttcagccaccctaatgataacaatttaatcttatccaacaacctggg 37724320  T
Q  211 agcctcggttacaacatttttaaacaa 237  Q
      | || |||||||||||  |||||||    
T  37724319 tacgtccgttacaacattactaaacaa 37724293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 45235534 - 45235616
Alignment:
Q  89 tagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    |||||||| |||| |||||| | ||| ||||||||||||  |||||||||||||||||| || || |||||||| ||||||||    
T  45235534 tagccaatacccaaacaaacaagagggcttgaccaccacgactgagttccaaaaacaaaggtagcttttttagcattcagcca 45235616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 92 - 147
Target Start/End: Original strand, 43571740 - 43571795
Alignment:
Q  92 ccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaa 147  Q
    |||||||| ||||| | ||||||||| ||||||||||||||||| |||||||||||    
T  43571740 ccaatgcctagacataacaaaggactagaccaccacatctgagtaccaaaaacaaa 43571795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 13439636 - 13439715
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||||| |||| |||||| | ||| |||||||| |||  |||||| ||||||||||| || || |||||||||||||    
T  13439636 ttagccaatacccaaacaaacaagagggcttgaccaacactgctgagtcccaaaaacaaaggtagcttttttagctttca 13439715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 67 - 126
Target Start/End: Complemental strand, 18219373 - 18219314
Alignment:
Q  67 agaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccacca 126  Q
    ||||||||||| |||| ||| ||||||||| |||| |||||||| | |||||||||||||    
T  18219373 agaggaaacaatctctagtgattagccaatacccaaacaaaccatatgacttgaccacca 18219314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 86 - 129
Target Start/End: Original strand, 19048175 - 19048218
Alignment:
Q  86 ggttagccaatgcccagacaaaccaaaggacttgaccaccacat 129  Q
    |||||||||||||||| |||||| ||||| ||||||||||||||    
T  19048175 ggttagccaatgcccatacaaacaaaagggcttgaccaccacat 19048218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 171
Target Start/End: Original strand, 36363137 - 36363189
Alignment:
Q  119 gaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    |||||||||| |||||| |||||||||||||| ||||  |||| |||||||||    
T  36363137 gaccaccacagctgagtaccaaaaacaaaagtagcatgattagttttcagcca 36363189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 38780808 - 38780704
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    |||| |||||||||| |||| | |||||  || |||||||| | ||||| |||||||||||  || |||| |||||||||||| || |||  ||||||||    
T  38780808 gttacccaatgcccaaacaatctaaagggtttaaccaccacctatgagtaccaaaaacaaacatgacattattagctttcagcgaccctagagataacaa 38780709  T
Q  187 cttaa 191  Q
     ||||    
T  38780708 tttaa 38780704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 163; Significance: 8e-87; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 163; E-Value: 8e-87
Query Start/End: Original strand, 69 - 282
Target Start/End: Complemental strand, 20198672 - 20198458
Alignment:
Q  69 aggaaacaacctctggtggttagc-caatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    |||||| | |||||||||||||   ||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  20198672 aggaaaaaccctctggtggttaaaacaatgcccaaacaagccaaaagacttgaccaccacatctgagttccaaaaacaaaagtgatatttttagctttca 20198573  T
Q  168 gccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcaccca 267  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  20198572 gccacactaacgataacaacttaattttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcaccaa 20198473  T
Q  268 agtagtcaaaagcca 282  Q
    |||||||||||||||    
T  20198472 agtagtcaaaagcca 20198458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 71 - 282
Target Start/End: Complemental strand, 53946474 - 53946263
Alignment:
Q  71 gaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcc 170  Q
    |||||| |||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||| |||||||||||  ||||||||||||||| ||    
T  53946474 gaaacaccctccggtggttagccaatgcccaaacaaaccaaaggatttgaccaccacatctgagttcctaaaacaaaagttacatttttagctttcaacc 53946375  T
Q  171 acactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagt 270  Q
    ||| |||||||||||||||||||||||||||||||||  |||||| ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||    
T  53946374 acattaacgataacaacttaattttatcaagcaatctatgagcctaggttacaacatttttaaacaaacgattattacgcttactccaaatcacccaagt 53946275  T
Q  271 agtcaaaagcca 282  Q
    ||||| ||||||    
T  53946274 agtcagaagcca 53946263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 67 - 278
Target Start/End: Original strand, 10867261 - 10867473
Alignment:
Q  67 agaggaaacaa-cctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagcttt 165  Q
    ||||||||||| ||||  ||| ||||||||||||||||||| |||   ||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  10867261 agaggaaacaaacctccagtgattagccaatgcccagacaagccatgagacttgaccaccacatctgagttccaaaaacaaaagtggtatttttagcttt 10867360  T
Q  166 cagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacc 265  Q
    ||||||| |||||||||||||||||||||||||||||||||| ||||||||  ||||||||||||||| |||||| |||||||||||| |||||| ||||    
T  10867361 cagccacgctaacgataacaacttaattttatcaagcaatctaggagcctcaattacaacatttttaagcaaacggttgttacgctcattccaaaccacc 10867460  T
Q  266 caagtagtcaaaa 278  Q
    |||| ||||||||    
T  10867461 caagaagtcaaaa 10867473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 76 - 252
Target Start/End: Original strand, 27497333 - 27497509
Alignment:
Q  76 aacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacact 175  Q
    |||||| ||||||||||||||| ||| |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27497333 aacctccggtggttagccaatgtccaaacaagccaaaggacttgaccaccacatctgaattccaaaaacaaaagtggcatttttagctttcagccacact 27497432  T
Q  176 aacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctc 252  Q
    |||||||||||||||||||||||||| ||||| |||| ||||||||||||| |||||||||||||||||||| ||||    
T  27497433 aacgataacaacttaattttatcaagtaatctaggagtctcggttacaacagttttaaacaaacgattgttaagctc 27497509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 59 - 265
Target Start/End: Complemental strand, 14868371 - 14868165
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| ||||||||||||||| |||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  14868371 caaagtcaagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 14868272  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    |||||||||||||  |||| ||||||||| ||||||||||||| ||||| ||| |||| || |  |||||||||||||||||| | ||||||||| ||||    
T  14868271 tagctttcagccaagctaaagataacaacataattttatcaagtaatctaggaacctcagtaaacacatttttaaacaaacgaatattacgctcattcca 14868172  T
Q  259 aatcacc 265  Q
    |||||||    
T  14868171 aatcacc 14868165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 154 - 282
Target Start/End: Original strand, 27969050 - 27969178
Alignment:
Q  154 atttttagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctca 253  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||  ||| ||||||||||| |||||||||||||| ||||| ||     
T  27969050 atttttagctttcagccacactaacgataacaacttaattctatcaagcaatctaggaatctcagttacaacattattaaacaaacgattattacgttcg 27969149  T
Q  254 ctccaaatcacccaagtagtcaaaagcca 282  Q
     |||| |||||||||| ||  ||||||||    
T  27969150 ttccacatcacccaagaagaaaaaagcca 27969178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 85 - 246
Target Start/End: Complemental strand, 54440673 - 54440512
Alignment:
Q  85 tggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataac 184  Q
    ||||||||||||||||| |||| |||||||||||||||||||| | ||||| |||||| ||||  |||| |||||| |||||| ||||||||||||||||    
T  54440673 tggttagccaatgcccaaacaagccaaaggacttgaccaccacctatgagtaccaaaatcaaatatggcttttttacctttcatccacactaacgataac 54440574  T
Q  185 aacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgtt 246  Q
    || || || |||||||| || || ||| | || || |||||||| |||||||  ||||||||    
T  54440573 aatttgatcttatcaagtaacctaggaacatcagtaacaacattattaaacagtcgattgtt 54440512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 84 - 153
Target Start/End: Original strand, 27968818 - 27968887
Alignment:
Q  84 gtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggc 153  Q
    ||||||||| ||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||||||    
T  27968818 gtggttagcaaatgcccagacaagccagaggacttgaccaccacatctgagtgccaaaaacaaaagtggc 27968887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 110 - 236
Target Start/End: Complemental strand, 9163664 - 9163538
Alignment:
Q  110 aaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagcaatctgg 209  Q
    |||||||||||||||||||||||||| ||| |||||||  |||  |||||||||||||||||| |||| |||||||| ||||| ||||| | ||| || |    
T  9163664 aaaggacttgaccaccacatctgagtaccataaacaaacatggtttttttagctttcagccaccctaaagataacaatttaatcttatccaacaacctcg 9163565  T
Q  210 gagcctcggttacaacatttttaaaca 236  Q
    |  | || ||||||||||| |||||||    
T  9163564 ggacatccgttacaacattattaaaca 9163538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 19824328 - 19824204
Alignment:
Q  112 aggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagcaatctggga 211  Q
    ||||||||||||||||||||||||  || |||||||  |||| |||||||||||||||||| |||| |||| ||| ||||| ||||| | ||| || ||     
T  19824328 aggacttgaccaccacatctgagtatcataaacaaacatggcttttttagctttcagccaccctaatgatatcaatttaatcttatccaacaacctcggg 19824229  T
Q  212 gcctcggttacaacatttttaaaca 236  Q
     | || ||||||||||| |||||||    
T  19824228 acatccgttacaacattattaaaca 19824204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 25873669 - 25873556
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | |||  |||||||||||  ||||||||||||||||||  | || |||||||||||||||||  |||| || | ||||    
T  25873669 ttagccaatacccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaagatagcttttttagctttcagccaacctaaagacatcaac 25873570  T
Q  188 ttaattttatcaag 201  Q
    ||||  ||||||||    
T  25873569 ttaaccttatcaag 25873556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 186
Target Start/End: Original strand, 38926366 - 38926465
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    ||||||||||| |||||||| | || || |||||||||||| |||| || ||| |||||||  | || |||||| ||||||||||| |||| ||||||||    
T  38926366 gttagccaatgtccagacaatctaacgggcttgaccaccacctctgcgtaccataaacaaacatagcctttttaactttcagccaccctaaagataacaa 38926465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 9319692 - 9319595
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataaca 185  Q
    ||||||||||| ||||||| | ||||| | |||||||||| ||||||| ||| | |||||  || |||||||||| ||||||||| |||  |||||||    
T  9319692 ttagccaatgctcagacaagctaaagggcatgaccaccacctctgagtgccatacacaaacatgacatttttagccttcagccaccctagagataaca 9319595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 191
Target Start/End: Original strand, 36708467 - 36708571
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    ||||||||||||||| |||| | ||||| |||||||||||  |||| || ||| |||||||     |||||||||||||||||||| | || ||||||||    
T  36708467 gttagccaatgcccaaacaagctaaagggcttgaccaccatctctgcgtaccataaacaaacacaacatttttagctttcagccaccccaaagataacaa 36708566  T
Q  187 cttaa 191  Q
     ||||    
T  36708567 tttaa 36708571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 26009624 - 26009735
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    ||||||||||||||| |||| | |||||  ||||||||||| || | || |||||||||||  |  ||||||| ||||||||||||  ||| ||||| ||    
T  26009624 gttagccaatgcccaaacaagctaaagggtttgaccaccacctcggcgtgccaaaaacaaacataacatttttggctttcagccaccttaaagataataa 26009723  T
Q  187 cttaattttatc 198  Q
     |||| ||||||    
T  26009724 tttaactttatc 26009735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 92 - 167
Target Start/End: Original strand, 29308994 - 29309069
Alignment:
Q  92 ccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || || |||||||||||||    
T  29308994 ccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttca 29309069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 2814057 - 2813947
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||| | |||||||||   |||||| ||||||||||| || || ||||||||||||| |||  |||  || ||||||    
T  2814057 ttagccaatacccaaacaaacaagagggcatgaccaccattgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaac 2813958  T
Q  188 ttaattttatc 198  Q
    ||||| |||||    
T  2813957 ttaatcttatc 2813947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 48974410 - 48974468
Alignment:
Q  113 ggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||| |||||||||  |||||||||||||  |||| |||||||||||| |||||||||    
T  48974410 ggactagaccaccactgctgagttccaaaagtaaaaatggcatttttagttttcagcca 48974468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 23873749 - 23873809
Alignment:
Q  113 ggacttgaccaccacatctgagtt-ccaaaaacaaaagtggcatttttagctttcagccac 172  Q
    |||| |||||||||||| |||||  |||||||||||| ||||||||||| | |||||||||    
T  23873749 ggacctgaccaccacatatgagtaaccaaaaacaaaattggcatttttaaccttcagccac 23873809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 95 - 167
Target Start/End: Complemental strand, 28675479 - 28675407
Alignment:
Q  95 atgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||| |||||| |||||||| |||||||||  ||| || || ||||||||||| || |||||| ||||||    
T  28675479 atgcccaaacaaactaaaggactcgaccaccactactgcgtaccgaaaacaaaagtagcttttttaactttca 28675407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 83 - 285
Target Start/End: Complemental strand, 49265526 - 49265324
Alignment:
Q  83 ggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgata 182  Q
    |||| ||| |||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  49265526 ggtgattatccaatgcccaaacaaactaaaggacatgaccaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaatgata 49265427  T
Q  183 acaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaagcca 282  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||    
T  49265426 acaacttaattttatcaagcaatctaggagcctcggttacaacatttttaaacaaacgattgttacactcactccaaatcatccaagtagtcaaaagcca 49265327  T
Q  283 tat 285  Q
    |||    
T  49265326 tat 49265324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 7e-78
Query Start/End: Original strand, 83 - 282
Target Start/End: Original strand, 20795246 - 20795445
Alignment:
Q  83 ggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgata 182  Q
    |||||||| |||||||||| |||| | ||||||| |||||||||||| ||| ||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  20795246 ggtggttatccaatgcccaaacaagctaaaggacatgaccaccacatatgacttccaaaaacaaaagtgacatttttagctttaagccacactaacgata 20795345  T
Q  183 acaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaagcca 282  Q
    ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||    
T  20795346 acaacttaattttatcaagcaatctaggagtctcggttacaacatttttaaacaaacgattattacgctcactccaaatcatccaagtagtcaaaagcca 20795445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 83 - 278
Target Start/End: Original strand, 39429856 - 39430051
Alignment:
Q  83 ggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgata 182  Q
    |||| ||| |||||||||| |||| | ||||||| || ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  39429856 ggtgattatccaatgcccaaacaagctaaaggacatggccaccacatatgagttccaaaaacaaaagtggcatttttagctttaagccacactaacgata 39429955  T
Q  183 acaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaa 278  Q
    |||| || |||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  39429956 acaatttgattttaacaagcaatctaggagcctcggttacaacatttttaaacaaacgattattacgctcactctaaatcacccaagtagtcaaaa 39430051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 67 - 282
Target Start/End: Complemental strand, 41503479 - 41503263
Alignment:
Q  67 agaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagc-ttt 165  Q
    |||||||||||||||| ||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||| |||    
T  41503479 agaggaaacaacctctagtgattaaccaatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcttgtttagctttt 41503380  T
Q  166 cagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacc 265  Q
    ||| ||| |||| ||||||| ||||||||||||||| ||||| ||| |||| || |  ||||||||||||||| |||||||||||||  |||||||||||    
T  41503379 cagtcacgctaaagataacatcttaattttatcaagtaatctaggaacctcagtaatcacatttttaaacaaatgattgttacgctcgttccaaatcacc 41503280  T
Q  266 caagtagtcaaaagcca 282  Q
    ||||  | |||||||||    
T  41503279 caagatgacaaaagcca 41503263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 6890994 - 6890901
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtgg 152  Q
    ||||||| ||||||||||||||| |||| |||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  6890994 caaagtcaagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctgagtttcaaaaacaaaagtgg 6890901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 59 - 152
Target Start/End: Complemental strand, 6892840 - 6892747
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtgg 152  Q
    ||||||| ||||||||||||||| |||| |||||||| ||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||    
T  6892840 caaagtcaagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctgagtttcaaaaacaaaagtgg 6892747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 108 - 246
Target Start/End: Original strand, 44929839 - 44929976
Alignment:
Q  108 ccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagcaatct 207  Q
    |||||||||||||||||||||||||||| |||||||||||  || | ||| ||||||||||||||||||| |||||| ||||||| || || ||||| ||    
T  44929839 ccaaaggacttgaccaccacatctgagtaccaaaaacaaacatgacttttatagctttcagccacactaaagataacgacttaatcttttctagcaacct 44929938  T
Q  208 gggagcctcggttacaacatttttaaacaaacgattgtt 246  Q
    | || | |||||||||| ||| ||||||| ||| |||||    
T  44929939 gaga-catcggttacaatattattaaacatacggttgtt 44929976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 112 - 204
Target Start/End: Complemental strand, 16874025 - 16873933
Alignment:
Q  112 aggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagcaa 204  Q
    |||||||||||||||||| ||||| ||| ||| |||  |||| |||||||||||||||||| |||| |||||||| ||||||||||| |||||    
T  16874025 aggacttgaccaccacatatgagtaccataaataaacatggcttttttagctttcagccaccctaatgataacaatttaattttatccagcaa 16873933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 87 - 191
Target Start/End: Complemental strand, 34854198 - 34854094
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    ||||| |||||||||||||| | |||||||||||||||||| |||  || |||||||||||  |||| |||||||||||||||||| |||  ||||||||    
T  34854198 gttagtcaatgcccagacaatctaaaggacttgaccaccacctctacgtaccaaaaacaaacatggcctttttagctttcagccaccctagagataacaa 34854099  T
Q  187 cttaa 191  Q
     ||||    
T  34854098 tttaa 34854094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 37530147 - 37530260
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    |||||||||  ||| |||||| | ||| ||||||||||||  |||||||||||||||||| || || |||||||||||||||||  |||| || | ||||    
T  37530147 ttagccaatatccaaacaaacaagagggcttgaccaccactgctgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaac 37530246  T
Q  188 ttaattttatcaag 201  Q
    ||||  ||||||||    
T  37530247 ttaaccttatcaag 37530260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 236 - 282
Target Start/End: Original strand, 17827032 - 17827078
Alignment:
Q  236 aaacgattgttacgctcactccaaatcacccaagtagtcaaaagcca 282  Q
    ||||||||||||||||||||||||||||||||||  |||||||||||    
T  17827032 aaacgattgttacgctcactccaaatcacccaagacgtcaaaagcca 17827078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 32353854 - 32353741
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || || ||||||||||||| |||  |||  || |||| |    
T  32353854 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagc 32353755  T
Q  188 ttaattttatcaag 201  Q
    ||||| ||||||||    
T  32353754 ttaatcttatcaag 32353741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 37139684 - 37139585
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    |||||||||| |||| ||||   ||||| |||||||||||| |||| || ||||| |||||  |  ||||||| ||||||||||| ||||||||||||||    
T  37139684 gttagccaatacccaaacaagttaaagggcttgaccaccacctctgcgtgccaaacacaaacataacatttttggctttcagccatactaacgataacaa 37139585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 167
Target Start/End: Complemental strand, 48073989 - 48073910
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || || |||||||||||||    
T  48073989 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttca 48073910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 3692210 - 3692289
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||||| | || |||||| | ||| ||||||||||||  |||||| ||||||||||| || || |||||||||||||    
T  3692210 ttagccaatactcaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttca 3692289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 30971143 - 30971050
Alignment:
Q  110 aaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagca 203  Q
    ||||| || |||||||||  |||||||||||||  |||| || |||||||||||| ||||||  |||| || || |||||||| |||| |||||    
T  30971143 aaagggctagaccaccactgctgagttccaaaagtaaaaatgacatttttagcttgcagccaacctaaagacaataacttaatcttataaagca 30971050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 155; Significance: 5e-82; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 72 - 282
Target Start/End: Original strand, 13085106 - 13085316
Alignment:
Q  72 aaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||| |||| |||||||||||||| |||| |||||||||||||||| ||||||||| ||| |||||||||||||||||  |||||||||||||||||||    
T  13085106 aaacaccctccggtggttagccaattcccaaacaaaccaaaggacttaaccaccacaactgggttccaaaaacaaaagtcacatttttagctttcagcca 13085205  T
Q  172 cactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagta 271  Q
    ||||||||||||||||||||||||||| |||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||     
T  13085206 cactaacgataacaacttaattttatctagcaatctaggagcctcagttacaacatttttaaacaaacgattattacgctcactccaaatcacccaagtg 13085305  T
Q  272 gtcaaaagcca 282  Q
    |||||||||||    
T  13085306 gtcaaaagcca 13085316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 59 - 282
Target Start/End: Complemental strand, 33572786 - 33572563
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||| |||||    
T  33572786 caaagtcaagaggaaacaacctctggtgattagtcaatgcccagacaaaccatatgacttgaccaccacatttgagttccaaaaagaaaagtggtatttt 33572687  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    ||| |||||| ||| |||| ||||||||||||||||||||||| ||||| ||| |||||||||  |||||||||||||||||||||||||||||| ||||    
T  33572686 tagatttcagtcacgctaatgataacaacttaattttatcaagtaatctaggaacctcggttatcacatttttaaacaaacgattgttacgctcattcca 33572587  T
Q  259 aatcacccaagtagtcaaaagcca 282  Q
    |||||||||||  | |||||||||    
T  33572586 aatcacccaagatgacaaaagcca 33572563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 72 - 190
Target Start/End: Original strand, 6284281 - 6284399
Alignment:
Q  72 aaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||| |||| ||||||||| ||||||||| |||||||||| ||||||||||||||||||||||| |||||||||||||   |||||||||||||| |||    
T  6284281 aaacaccctccggtggttagtcaatgcccaaacaaaccaaaagacttgaccaccacatctgagtttcaaaaacaaaagttatatttttagctttcaacca 6284380  T
Q  172 cactaacgataacaactta 190  Q
    |||||||||||||||||||    
T  6284381 cactaacgataacaactta 6284399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 112 - 237
Target Start/End: Original strand, 33804388 - 33804513
Alignment:
Q  112 aggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagcaatctggga 211  Q
    |||||||||||||||||||||||| ||| |||||||  |||||||||||||||| |||||| |||| |||||||| ||||| ||||| | ||| || ||     
T  33804388 aggacttgaccaccacatctgagtaccataaacaaacatggcatttttagctttaagccaccctaatgataacaatttaatcttatccaacaaccttggg 33804487  T
Q  212 gcctcggttacaacatttttaaacaa 237  Q
     | || ||||||||||| ||||||||    
T  33804488 acgtccgttacaacattattaaacaa 33804513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 8873383 - 8873270
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||| ||||||||||||   ||||||||||||||||| || || |||||||||||||||||  |||| || | ||||    
T  8873383 ttagccaatacccaaacaaacaagagggcttgaccaccactgttgagttccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaac 8873284  T
Q  188 ttaattttatcaag 201  Q
    ||||  ||||||||    
T  8873283 ttaaccttatcaag 8873270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 31297702 - 31297603
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    |||||||||||||||||||| | || || |||||||||||| |||| || ||| |||||||  | || ||||||| |||||||||| |||| ||||||||    
T  31297702 gttagccaatgcccagacaatctaacgggcttgaccaccacctctgcgtaccataaacaaacattgcctttttagttttcagccactctaaagataacaa 31297603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 87 - 192
Target Start/End: Original strand, 24749230 - 24749335
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    ||||||||||||||| |||| | ||||| |||||||| ||  ||||||| |||||||||||  ||| |||||| | |||||||||| |||  ||||||||    
T  24749230 gttagccaatgcccaaacaagctaaagggcttgaccatcatctctgagtgccaaaaacaaacatggtatttttggttttcagccaccctagagataacaa 24749329  T
Q  187 cttaat 192  Q
     |||||    
T  24749330 tttaat 24749335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 15673408 - 15673487
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || || |||||||||||||    
T  15673408 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttca 15673487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 87 - 186
Target Start/End: Complemental strand, 23066608 - 23066509
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    |||||||||||||||||||| | || || |||||||||||| |||| || ||| |||||||     | |||||||||||||||||| |||| ||||||||    
T  23066608 gttagccaatgcccagacaatctaatgggcttgaccaccacctctgcgtaccataaacaaacacaacgtttttagctttcagccaccctaaagataacaa 23066509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 88 - 147
Target Start/End: Original strand, 32326836 - 32326895
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaa 147  Q
    ||||||||||||||||||||| ||||| |||||||||||| |||  || |||||||||||    
T  32326836 ttagccaatgcccagacaaactaaagggcttgaccaccacctctatgtaccaaaaacaaa 32326895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 87 - 171
Target Start/End: Original strand, 4406594 - 4406678
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||||| ||||||| |||| | ||||| || ||| ||||| ||||||| |||||| |||| ||||| || ||||||||||||||    
T  4406594 gttagcctatgcccaaacaagctaaagggctcgactaccacctctgagtaccaaaaccaaatgtggctttcttagctttcagcca 4406678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 167
Target Start/End: Original strand, 13755048 - 13755127
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttca 167  Q
    ||||||||| |||| |||||| | |||  |||||||||||  |||||| ||||||||||| || || |||||||||||||    
T  13755048 ttagccaatacccaaacaaacaagagggtttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttca 13755127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 186
Target Start/End: Complemental strand, 10008797 - 10008699
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaa 186  Q
    |||||||||||||| |||||| || || |||||||||||| | || || ||| | |||||  |||||||||| || ||||||||| |||  ||||||||    
T  10008797 ttagccaatgcccaaacaaactaaggggcttgaccaccacctttgggtaccagatacaaacttggcattttttgccttcagccaccctagagataacaa 10008699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 23348023 - 23347913
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    |||| |||| |||| |||||| | ||| | ||||||||||  |||||| ||||||||||| || || ||||||||||||| |||  |||  || ||||||    
T  23348023 ttagtcaatacccaaacaaacaagagggcgtgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacaac 23347924  T
Q  188 ttaattttatc 198  Q
    ||||| |||||    
T  23347923 ttaatcttatc 23347913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 204
Target Start/End: Original strand, 11468166 - 11468287
Alignment:
Q  83 ggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgata 182  Q
    |||||||| ||||| || | ||||  |||||| |||||||||||| | | ||| |||||||||||| |||  |||||||| |||| |||| |||  ||||    
T  11468166 ggtggttaaccaattcctaaacaagtcaaagggcttgaccaccacctttaagtaccaaaaacaaaaatggtttttttagccttcaaccacgctagggata 11468265  T
Q  183 acaacttaattttatcaagcaa 204  Q
    |  | ||||| |||||||||||    
T  11468266 aagatttaatcttatcaagcaa 11468287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 143; Significance: 7e-75; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 59 - 285
Target Start/End: Original strand, 4399431 - 4399657
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| |||||||||||||||  ||| ||||| |||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||    
T  4399431 caaagtcaagaggaaacaacctccagtgattagctaatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcttttt 4399530  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    |||||||||||| | |||| ||||||||||||||||||||||| ||||| ||| ||||||| |  |||||||||||||||||||||||||||||| ||||    
T  4399531 tagctttcagccgcgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacatttttaaacaaacgattgttacgctcattcca 4399630  T
Q  259 aatcacccaagtagtcaaaagccatat 285  Q
    |||||||||||  | ||||||||||||    
T  4399631 aatcacccaagatgacaaaagccatat 4399657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 59 - 285
Target Start/End: Original strand, 8571484 - 8571710
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| |||||||||||||||  ||| |||||||| ||||| ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||    
T  8571484 caaagtcaagaggaaacaacctccagtgattagccaaagcccaaacaaaccatgggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 8571583  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    |||||||||||||| |||| ||||||||||||||||||||||| ||||| ||| ||||||| |  |||||||||||||||||||| ||||||||| ||||    
T  8571584 tagctttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacatttttaaacaaacgattattacgctcattcca 8571683  T
Q  259 aatcacccaagtagtcaaaagccatat 285  Q
    ||||| ||||| ||||| |||||||||    
T  8571684 aatcatccaagaagtcagaagccatat 8571710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 134; E-Value: 2e-69
Query Start/End: Original strand, 59 - 284
Target Start/End: Complemental strand, 19514051 - 19513826
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| ||||||||||||||| |||| |||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  19514051 caaagtcaagaggaaacaacctccggtgattagccaaagcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 19513952  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    |||| ||||||||| |||| ||||||||||||||||||||||| || || ||| ||||||| |  |||||||||||||||||| | || |||||| ||||    
T  19513951 tagccttcagccacgctaaagataacaacttaattttatcaagtaacctaggaacctcggtaatcacatttttaaacaaacgaatatttcgctcattcca 19513852  T
Q  259 aatcacccaagtagtcaaaagccata 284  Q
    |||||||||||  |||| ||||||||    
T  19513851 aatcacccaagatgtcagaagccata 19513826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 59 - 285
Target Start/End: Original strand, 17737715 - 17737936
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| |||||||||||||||  ||| |||||||| ||||| |||||||| ||||||||||||||     ||||||||||||||||||||||||||||    
T  17737715 caaagtcaagaggaaacaacctccagtgattagccaaagcccaaacaaaccataggacttgaccacc-----tgagttccaaaaacaaaagtggcatttt 17737809  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    |||||||||||||| |||| ||||||||||||||||||||||| ||||| ||| ||||||| |  |||||||||||||||||||| ||||||||| ||||    
T  17737810 tagctttcagccacgctaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacatttttaaacaaacgattattacgctcattcca 17737909  T
Q  259 aatcacccaagtagtcaaaagccatat 285  Q
    |||||||||||  |||| |||||||||    
T  17737910 aatcacccaagatgtcagaagccatat 17737936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 120 - 282
Target Start/End: Original strand, 13916889 - 13917051
Alignment:
Q  120 accaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggt 219  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||| || || |||||||||||||||||||||||||||| ||||||| |||    
T  13916889 accaccacatatgagttccaaaaacaaaagtggcatttttagctttcagtcacgctgacaataacaacttaattttatcaagcaatctaggagccttggt 13916988  T
Q  220 tacaacatttttaaacaaacgattgttacgctcactccaaatcacccaagtagtcaaaagcca 282  Q
    ||||| ||||||||||||| |||||||||||||| || ||| |||||||| ||||||||||||    
T  13916989 tacaatatttttaaacaaatgattgttacgctcattcaaaaccacccaagaagtcaaaagcca 13917051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 59 - 172
Target Start/End: Complemental strand, 3199713 - 3199600
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| |||||||||||||||  ||| |||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  3199713 caaagtcaagaggaaacaacctccagtgattaggcaatgcccaaacaaaccataggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 3199614  T
Q  159 tagctttcagccac 172  Q
    ||||||||||||||    
T  3199613 tagctttcagccac 3199600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 35123239 - 35123115
Alignment:
Q  112 aggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatcaagcaatctggga 211  Q
    |||||||||||||||||||| ||| ||| |||||||  |||| |||| ||||||||||||| |||| |||||||| ||||| ||||| | ||| || ||     
T  35123239 aggacttgaccaccacatctaagtaccataaacaaacatggctttttcagctttcagccaccctaatgataacaatttaatcttatccaacaacctcggg 35123140  T
Q  212 gcctcggttacaacatttttaaaca 236  Q
     | || ||||||||||| |||||||    
T  35123139 acgtccgttacaacattattaaaca 35123115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 88 - 191
Target Start/End: Complemental strand, 6264755 - 6264652
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | |||  |||||||||||  ||||||||||||||||||||| || ||||||||||||| |||  |||| || ||||||    
T  6264755 ttagccaatacccaaacaaacaagagggtttgaccaccactgctgagttccaaaaacaaaagtagcttttttagctttcaaccaacctaaagacaacaac 6264656  T
Q  188 ttaa 191  Q
    ||||    
T  6264655 ttaa 6264652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 88 - 198
Target Start/End: Original strand, 32917900 - 32918010
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||||||||||||||||  |||||||||||||||||| || || |||||| |||| |||||  |||| || |||| |    
T  32917900 ttagccaatacccaaacaaacaagaggacttgaccaccactgctgagttccaaaaacaaaggtagcttttttaactttaagccaacctaaagacaacatc 32917999  T
Q  188 ttaattttatc 198  Q
    ||||| |||||    
T  32918000 ttaatcttatc 32918010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 88 - 201
Target Start/End: Original strand, 34480539 - 34480652
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || || |||||||||||||||||  |||| || | ||||    
T  34480539 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtgccaaaaacaaaggtagcttttttagctttcagccaacctaaagacatcaac 34480638  T
Q  188 ttaattttatcaag 201  Q
    ||||  ||||||||    
T  34480639 ttaaccttatcaag 34480652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 15005782 - 15005830
Alignment:
Q  115 acttgaccaccacatctgagttccaaaaacaaaagtggcatttttagct 163  Q
    ||||||||||||||| |||||||||||||||||||| ||||||||||||    
T  15005782 acttgaccaccacatatgagttccaaaaacaaaagtagcatttttagct 15005830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 173 - 238
Target Start/End: Complemental strand, 3199581 - 3199516
Alignment:
Q  173 actaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaa 238  Q
    ||||| ||||||||||||||||||||||| ||||| ||| ||||||| |  |||||||||||||||    
T  3199581 actaaagataacaacttaattttatcaagtaatctaggaacctcggtaatcacatttttaaacaaa 3199516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 117 - 198
Target Start/End: Complemental strand, 15500174 - 15500093
Alignment:
Q  117 ttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatc 198  Q
    |||||||||||  ||||||||||||||||||||| || ||||||||||| |||||  |||| || || |||||||| |||||    
T  15500174 ttgaccaccactgctgagttccaaaaacaaaagtagcttttttagctttaagccaacctaaagacaataacttaatcttatc 15500093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 88 - 201
Target Start/End: Complemental strand, 34858250 - 34858137
Alignment:
Q  88 ttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaac 187  Q
    ||||||||| |||| |||||| | ||| ||||||||||||  |||||| ||||||||||| || || ||||||||||||| |||  |||  || |||| |    
T  34858250 ttagccaatacccaaacaaacaagagggcttgaccaccactgctgagtcccaaaaacaaaggtagcttttttagctttcaaccaacctagagacaacagc 34858151  T
Q  188 ttaattttatcaag 201  Q
    ||||| ||||||||    
T  34858150 ttaatcttatcaag 34858137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 131 - 171
Target Start/End: Original strand, 31862219 - 31862259
Alignment:
Q  131 tgagttccaaaaacaaaagtggcatttttagctttcagcca 171  Q
    ||||| ||||||||||||||| |||||||||||||||||||    
T  31862219 tgagtaccaaaaacaaaagtgacatttttagctttcagcca 31862259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 140; Significance: 4e-73; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 59 - 282
Target Start/End: Original strand, 1006 - 1229
Alignment:
Q  59 caaagtcgagaggaaacaacctctggtggttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttt 158  Q
    ||||||| |||||||||||||||||||| |||| |||||||||||||||||| | |||||||||||||||| ||||||||||||| |||||||| |||||    
T  1006 caaagtcaagaggaaacaacctctggtgattagtcaatgcccagacaaaccatatgacttgaccaccacatttgagttccaaaaagaaaagtggtatttt 1105  T
Q  159 tagctttcagccacactaacgataacaacttaattttatcaagcaatctgggagcctcggttacaacatttttaaacaaacgattgttacgctcactcca 258  Q
    ||| |||||| ||| |||| ||||||||||||||||||||||| ||||| ||| |||||||||  |||||||||||||||||||||||||||||| ||||    
T  1106 tagatttcagtcacgctaatgataacaacttaattttatcaagtaatctaggaacctcggttatcacatttttaaacaaacgattgttacgctcattcca 1205  T
Q  259 aatcacccaagtagtcaaaagcca 282  Q
    |||||||||||  | |||||||||    
T  1206 aatcacccaagatgacaaaagcca 1229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0308 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold0308
Description:

Target: scaffold0308; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 112 - 198
Target Start/End: Original strand, 16269 - 16355
Alignment:
Q  112 aggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccacactaacgataacaacttaattttatc 198  Q
    |||||||||||||||||||||||| ||| |||||||  |||| |||||||||||||||||| |||| |||||||| ||||| |||||    
T  16269 aggacttgaccaccacatctgagtaccataaacaaacatggcttttttagctttcagccaccctaatgataacaatttaatcttatc 16355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 87 - 172
Target Start/End: Complemental strand, 16159 - 16075
Alignment:
Q  87 gttagccaatgcccagacaaaccaaaggacttgaccaccacatctgagttccaaaaacaaaagtggcatttttagctttcagccac 172  Q
    ||||||||||||| |||||| | ||||| |||||||||||| ||||  | |||||||||||  || |||| |||||||||||||||    
T  16159 gttagccaatgcc-agacaagctaaagggcttgaccaccacctctgtataccaaaaacaaacatgacattcttagctttcagccac 16075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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