View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_high_9 (Length: 277)
Name: NF9200_high_9
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_high_9 |
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| [»] scaffold0328 (1 HSPs) |
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| [»] scaffold0009 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 239; Significance: 1e-132; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 259
Target Start/End: Complemental strand, 22933833 - 22933587
Alignment:
| Q |
13 |
gtttggtgttggagctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatg |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22933833 |
gtttggtgttggacctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatg |
22933734 |
T |
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| Q |
113 |
cttcggtaaattccattcgtaaatatctgtaaaaggatttaaaatgtgaaccatgattgaaaaactaaataaaatgttcgtcggataccaaaagatcatt |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22933733 |
cttcggtaaattccattcgtaaatatctgtaaaaggatttaaaatgtgaaccataattgaaaaactaaataaaatgttcgtcggataccaaaagatcatt |
22933634 |
T |
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| Q |
213 |
gccaagacgaatgattttggcctcaaagaaagcctttacgatgaaaa |
259 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22933633 |
gccaagacgaatgattttggcctcaaagaaagcctttacgatgaaaa |
22933587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 141
Target Start/End: Original strand, 22981461 - 22981587
Alignment:
| Q |
15 |
ttggtgttggagctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgct |
114 |
Q |
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||||||||||| ||||||| |||||||| | ||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| |||||||||||| |
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| T |
22981461 |
ttggtgttggacctataacactgctcatttgaagcctatgaaatgtagcaatggatatcctctccttctttgaatttactgttcctctatgctcaatgct |
22981560 |
T |
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| Q |
115 |
tcggtaaattccattcgtaaatatctg |
141 |
Q |
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| T |
22981561 |
tcggtaaattccattggttaatatctg |
22981587 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 16 - 152
Target Start/End: Complemental strand, 21351467 - 21351331
Alignment:
| Q |
16 |
tggtgttggagctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgctt |
115 |
Q |
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|||||||||| ||| || | ||||||| | | |||||||||||||||||| ||||||||||| ||| ||||||| | | || ||||||| ||||||||| |
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| T |
21351467 |
tggtgttggacctagaattttgctcatttgagccctatgaaatgtagcaattgatatcctctcattcattgaattgattgttgctcgatgttcaatgctt |
21351368 |
T |
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| Q |
116 |
cggtaaattccattcgtaaatatctgtaaaaggattt |
152 |
Q |
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| T |
21351367 |
cggtaaattccgttagttaatatctgcaaaaggattt |
21351331 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 48 - 129
Target Start/End: Complemental strand, 21250994 - 21250913
Alignment:
| Q |
48 |
gcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccatt |
129 |
Q |
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|||||||||||| ||||||||| ||||| || || | |||||| ||| || ||||||| |||||||||||||| |||||||| |
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| T |
21250994 |
gcctatgaaatgcagcaatggaaatcctttctttttctgaattaactgttgctcgatgttcaatgcttcggtatattccatt |
21250913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 157
Target Start/End: Complemental strand, 21212529 - 21212425
Alignment:
| Q |
53 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccattcgtaaatatctgtaaaaggattt |
152 |
Q |
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|||||||| |||||||| ||||||||||||| ||| || | || ||||||| ||||| ||||| ||||| |||||||| | ||||||| ||| |||| |
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| T |
21212529 |
tgaaatgtggcaatggaaatcctctccttctctgagttaatcgttgctcgatgttcaatacttcgataaataccattcgtcattatctgtcaaacaattt |
21212430 |
T |
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| Q |
153 |
aaaat |
157 |
Q |
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||||| |
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| T |
21212429 |
aaaat |
21212425 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0328 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0328
Description:
Target: scaffold0328; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 53 - 141
Target Start/End: Complemental strand, 9869 - 9781
Alignment:
| Q |
53 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccattcgtaaatatctg |
141 |
Q |
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||||||||||| || ||||||||||||||| |||||||||| || ||||||| ||||| |||| |||||||||||| || |||||||| |
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| T |
9869 |
tgaaatgtagccatagatatcctctccttcactgaattcactgttgctcgatgttcaatacttctgtaaattccattggtcaatatctg |
9781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 18 - 141
Target Start/End: Original strand, 22485 - 22608
Alignment:
| Q |
18 |
gtgttggagctataactctgctcatattaagcctatgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcg |
117 |
Q |
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|||||||| |||||||| ||||||| | | | || ||||||| ||||||||| |||||| | |||| |||||| || | ||||||| ||||||||||| |
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| T |
22485 |
gtgttggacctataactttgctcatctgaggtctgtgaaatgcagcaatggaaatcctcgctttctctgaattaaccgtagctcgatgttcaatgcttcg |
22584 |
T |
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| Q |
118 |
gtaaattccattcgtaaatatctg |
141 |
Q |
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||||||||||| || |||||||| |
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| T |
22585 |
ataaattccatttgtcaatatctg |
22608 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 74 - 129
Target Start/End: Original strand, 257382 - 257437
Alignment:
| Q |
74 |
ctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccatt |
129 |
Q |
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|||||||||| |||||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
257382 |
ctctccttctctgaattcactgttgctcgatgttcaatgcttcggtaaattccatt |
257437 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 53 - 129
Target Start/End: Original strand, 214979 - 215055
Alignment:
| Q |
53 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccatt |
129 |
Q |
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||||||| ||||| || || |||||||||| |||||||| || ||||||| ||||||||||||||||||||||| |
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| T |
214979 |
tgaaatgcagcaacagagattctctccttctccgaattcaccgttgctcgatgttcaatgcttcggtaaattccatt |
215055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 53 - 142
Target Start/End: Original strand, 26913767 - 26913856
Alignment:
| Q |
53 |
tgaaatgtagcaatggatatcctctccttctttgaattcactattcctcgatgctcaatgcttcggtaaattccattcgtaaatatctgt |
142 |
Q |
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|||||||| ||||| || ||||||||||||| ||| || | | || ||||||| ||||| ||||| ||||| |||||||| | ||||||| |
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| T |
26913767 |
tgaaatgtggcaatcgaaatcctctccttctctgagttaattgttgctcgatgttcaatacttcgataaataccattcgtcattatctgt |
26913856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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