View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_low_1 (Length: 623)
Name: NF9200_low_1
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 319; Significance: 1e-180; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 103 - 454
Target Start/End: Complemental strand, 43692257 - 43691892
Alignment:
| Q |
103 |
agtagagtttggagacacggagcataaacaatctattgttgagaagtttgagacatttacatggaatgttgagaatttctctcgctggaacggggggact |
202 |
Q |
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| T |
43692257 |
agtagagtttggagacacggagcataaacaatctattgttgagaagtttgagacatttacatggaatgttgagaatttctctcgctggaacggggggact |
43692158 |
T |
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| Q |
203 |
tactctgagccttttgtgctaggtggctatccatggtatgctatttgtatgaataaattctcacatgttagaatttagtgatctgattttgcttttgctt |
302 |
Q |
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| T |
43692157 |
tactctgagccttttgtgctaggtggctatccatggtatgctatttgtatgaataaattctcacatgttagaatttagtgatctgattttgcttttgctt |
43692058 |
T |
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| Q |
303 |
taggaagatacttcttatcaatggggtgacaatgtaggcgac--------------gagtgttgtggaaactgctaacatgtctaaaggatggagcagac |
388 |
Q |
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| T |
43692057 |
taggaagatacttcttatcaatggggtgacaatgtaggcgacttatcaatttttttgagtgttgtggaaactgctaacatgtctaaaggatggagcagac |
43691958 |
T |
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| Q |
389 |
atgtgaaatttaagttgtttgtacttaaccaggtcgacagcaacaggacaatcttctctgatggta |
454 |
Q |
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| T |
43691957 |
atgtgaaatttaagttgtttgtacttaaccaggtcgacagcaacaggacaatcttctctgatggta |
43691892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 524 - 608
Target Start/End: Complemental strand, 43691822 - 43691738
Alignment:
| Q |
524 |
acacaaatcaagaaaataaatatataagttagaagatttttcctttagagtagtttaattgactcttgattcatgctttttccca |
608 |
Q |
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| T |
43691822 |
acacaaatcaagaaaataaatatataagttagaagatttttcctttagagtagtttaattgactcttgattcatgctttttccca |
43691738 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 72
Target Start/End: Complemental strand, 43692335 - 43692287
Alignment:
| Q |
24 |
atgctttttatcaactctcctaccagaatttgttctcttaaataaaata |
72 |
Q |
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| T |
43692335 |
atgctctttatcaactctcctaccagaatttgttctcttaaataaaata |
43692287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 43693846 - 43693774
Alignment:
| Q |
121 |
ggagcataaacaatctattgttgagaagtttgagacatttacatggaatgttgagaatttctctcgctggaac |
193 |
Q |
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| T |
43693846 |
ggagcataaacactctagtgttgagaagtttgaaacattcacgtggaaggttgagaacttctcttgcttgaac |
43693774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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