View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_low_13 (Length: 330)
Name: NF9200_low_13
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 258; Significance: 1e-143; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 19 - 320
Target Start/End: Original strand, 2459561 - 2459863
Alignment:
| Q |
19 |
atgtagcagatagtttaaacacacttgacacttcattacatccgcatttggtcagtctcactaattgccttctaaaaaagtgcagaggtttttt-caact |
117 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
2459561 |
atgtagcagatagtttaaacagacttgacacttcattacatccacatttggtcagtctcactaattgccttctaaaaaagagcagaggtttttttcaact |
2459660 |
T |
|
| Q |
118 |
tctattagatgtaggcttgaatagcaaatttgtcnnnnnnngagcttgaataggaaaaggaagggttattacagtaaatttttgtgtctgttaagatttc |
217 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2459661 |
tctattagatgtaggcttgaatagcaaatttgtcaaaaaaagagcttgaataggaaaaggaagggttattacagtatatttttgtgtctgttaagatttc |
2459760 |
T |
|
| Q |
218 |
ttattgatgatgacagggaggaataatacttgggccgtcagcgcttggacggaataaaagctatctacgagcagttttcccatccaagagtcttccagta |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2459761 |
ttattgatgatgacagggaggaataatacttgggccgtcagcgcttggacggaataaaagctatctacgagcagttttcccatccaagagtcttccagta |
2459860 |
T |
|
| Q |
318 |
tta |
320 |
Q |
| |
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||| |
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| T |
2459861 |
tta |
2459863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 195 - 320
Target Start/End: Original strand, 2448722 - 2448845
Alignment:
| Q |
195 |
atttttgtgtctgttaagatttcttattgatgatgacagggaggaataatacttgggccgtcagcgcttggacggaataaaagctatctacgagcagttt |
294 |
Q |
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| T |
2448722 |
atttttgtgtct--taagattgcttattgatgatgacagggaggaatactacttgggccgtcagcgcttggacggaataaaggctatctacatgcagttt |
2448819 |
T |
|
| Q |
295 |
tcccatccaagagtcttccagtatta |
320 |
Q |
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||||| |||||||||||||||||||| |
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| T |
2448820 |
tcccacccaagagtcttccagtatta |
2448845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 228 - 320
Target Start/End: Original strand, 2443999 - 2444091
Alignment:
| Q |
228 |
tgacagggaggaataatacttgggccgtcagcgcttggacggaataaaagctatctacgagcagttttcccatccaagagtcttccagtatta |
320 |
Q |
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||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |
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| T |
2443999 |
tgacagggaggaatactacttgggccatcagcatttggacggaataaaagctatctacatgcagttttcccacccaagagtcttccagtatta |
2444091 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 19 - 123
Target Start/End: Original strand, 2448620 - 2448724
Alignment:
| Q |
19 |
atgtagcagatagtttaaacacacttgacacttcattacatccgcatttggtcagtctcactaattgccttctaaaaaagtgcagaggttttttcaactt |
118 |
Q |
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|||| ||||| |||||||||| ||||| |||||||||| |||| ||||||| |||||| ||||||||||||||||| || | ||||||||||||||||| |
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| T |
2448620 |
atgtcgcagagagtttaaacagacttggcacttcattaaatccacatttggccagtcttgctaattgccttctaaaatagagaagaggttttttcaactt |
2448719 |
T |
|
| Q |
119 |
ctatt |
123 |
Q |
| |
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||||| |
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|
| T |
2448720 |
ctatt |
2448724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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