View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_low_15 (Length: 326)
Name: NF9200_low_15
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_low_15 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 40390217 - 40390539
Alignment:
| Q |
1 |
tcttatgacctcattatttctgaagagataactatagtaccatatagccagcataaacatggtaaagaagggaaaaagaaaattttattttttaaaacca |
100 |
Q |
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| T |
40390217 |
tcttatgaactcattatttctgaagagataactatagtactatatagccagcataaacatggtaaagaaaggaaaaagaaaattttattttttaaaacca |
40390316 |
T |
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| Q |
101 |
actaaacaaagattgaaacaacaattcaatgaattatatccttcctacagcattcgttgatgtggataacctgtcattacattagaccttatgcaaaaat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40390317 |
actaaacaaagattgaaacaacaattcaatgaattatatccttcctacagcattcgttgatgtggataacctgtcattacattagaccttatgcaaaaat |
40390416 |
T |
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| Q |
201 |
tctcaatccagtggacggagtaagagcctgctgcaaggtgccaacaacatctcaaccaatacaaaatataaagatgaatggatttacctgataaaagcct |
300 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40390417 |
tctcaatccagtggacggagtaagagcctactgcaaggtgc---caacatctcaaccaatacaaaatataaagatgaatggatttacctgataaaagcct |
40390513 |
T |
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| Q |
301 |
tcatgttattgtagatagaactacct |
326 |
Q |
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||||||||||||||||||| |||||| |
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| T |
40390514 |
tcatgttattgtagatagatctacct |
40390539 |
T |
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