View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_low_16 (Length: 318)
Name: NF9200_low_16
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 304
Target Start/End: Complemental strand, 42393791 - 42393488
Alignment:
| Q |
1 |
tgctaacatgtgccctaaggcgcgtgttgaagaacttaataccattgagtttgtatgaacaagacatggtacttggtggatcagacacatcctccaatac |
100 |
Q |
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|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
42393791 |
tgctaacatgtgccctaaggcgtgcgttgaagaacttaataccattgagtttgtatgaacaggacatggtacttggtggatcagacacatcctccaatac |
42393692 |
T |
|
| Q |
101 |
cgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaa |
200 |
Q |
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|||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42393691 |
cgttgaatttgcaatggcagaaatgatgaacaaaccaggagtaatgaggaaggttcaagaggaattggaagcagtggttgggaaagataacttagtagaa |
42393592 |
T |
|
| Q |
201 |
gagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
42393591 |
gagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgtttgcacccatcacttccacttctaatgtctcattgcccaagtg |
42393492 |
T |
|
| Q |
301 |
aaac |
304 |
Q |
| |
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|||| |
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| T |
42393491 |
aaac |
42393488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 49 - 304
Target Start/End: Complemental strand, 42387539 - 42387285
Alignment:
| Q |
49 |
gtttgtatgaacaagacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgag |
148 |
Q |
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|||| |||||||| ||||||||| | ||||||||||||||||||||||| || ||||||||| ||| ||| |||| ||| |||| |||| ||||||||| |
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| T |
42387539 |
gtttatatgaacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatagcataaatgatggacaa-ccagaagtaatgag |
42387441 |
T |
|
| Q |
149 |
gaaggttcaagaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaa |
248 |
Q |
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|||||||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
42387440 |
gaaggttcaagaggaactggaaatcgtggttgggaaagataacttagtagaagagtctcatattcaaaagctaccctacttgcaagcagtaatgaaagaa |
42387341 |
T |
|
| Q |
249 |
acccttcgtttgcacccatcacttccacttctaatgcctcattgcccaagtgaaac |
304 |
Q |
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|||||||||||||||||| ||||||||||| || | ||||| |||||||||||||| |
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| T |
42387340 |
acccttcgtttgcacccaacacttccacttttagtccctcactgcccaagtgaaac |
42387285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 58 - 304
Target Start/End: Complemental strand, 42377182 - 42376936
Alignment:
| Q |
58 |
aacaagacatggtacttggtggatcagacacatcctccaataccgttgagtttgcaatggcagaaataatgaacaaaccaggagtaatgaggaaggttca |
157 |
Q |
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|||| ||||||||| | ||||||||||||||||||||||| || ||||||||| |||||||||||| ||||||||||||| ||| |||||||||||||| |
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| T |
42377182 |
aacaggacatggtagtgggtggatcagacacatcctccaacacaattgagtttgtaatggcagaaatgatgaacaaaccagaagtgatgaggaaggttca |
42377083 |
T |
|
| Q |
158 |
agaggaattagaagcagtggttgggaaagataacttagtagaagagtctcatattcacaagctaccctacttgcaagcagtaatgaaagaaacccttcgt |
257 |
Q |
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|||||| |||||| | |||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| || ||||| ||||||||||| |||||| |
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| T |
42377082 |
agaggagttagaaactgtggttggaaaagataacttagtagaagagtctcatattcacaagctaacctacttacatgcagtgatgaaagaaactcttcgt |
42376983 |
T |
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| Q |
258 |
ttgcacccatcacttccacttctaatgcctcattgcccaagtgaaac |
304 |
Q |
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|| ||||| ||||||||||| || | ||||| |||||||||||||| |
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| T |
42376982 |
ttacaccctgcacttccacttttagtccctcactgcccaagtgaaac |
42376936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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