View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9200_low_17 (Length: 288)

Name: NF9200_low_17
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9200_low_17
NF9200_low_17
[»] chr2 (2 HSPs)
chr2 (10-288)||(25787552-25787831)
chr2 (252-288)||(34357403-34357439)
[»] chr1 (2 HSPs)
chr1 (255-288)||(1859315-1859348)
chr1 (252-288)||(29830978-29831014)
[»] chr8 (1 HSPs)
chr8 (252-288)||(2888447-2888483)
[»] chr4 (2 HSPs)
chr4 (256-288)||(8456895-8456927)
chr4 (256-288)||(34603852-34603884)
[»] chr3 (2 HSPs)
chr3 (256-288)||(1201043-1201075)
chr3 (256-288)||(47843832-47843864)


Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 10 - 288
Target Start/End: Complemental strand, 25787831 - 25787552
Alignment:
Q  10 agaacctgtggaacatcgaggacagaaaaaagaattgcacagattatgtcactcacagtccagttaagtatgaggtgactgcatacaaaagattattagt 109  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  25787831 agaacccgtggaacatcgaggacagaaaaaagaattgcacagattatgtcactcacagtccagttaactatgaggtgactgcatacaaaagattattagt 25787732  T
Q  110 tacatgctacaatgaagtagaaaccaacttaaaactaagtatacaacctaacatgcatcatctctta-nnnnnnnnnnnnnnngaggaaatgcatcatct 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                |||||||||||||||||    
T  25787731 tacatgctacaatgaagtagaaaccaacttaaaactaagtatacaacctaacatgcatcatctcttattttttttttttttttgaggaaatgcatcatct 25787632  T
Q  209 cttataaaacattgaagaaaaaacataatagttacttttgaaataaatactccctcggttcctttttaattgtcacattt 288  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  25787631 cttataaaacattgaagaaaaaacataatagttacttttgaaataaatactccctctgttcctttttaattgtcacattt 25787552  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 34357439 - 34357403
Alignment:
Q  252 taaatactccctcggttcctttttaattgtcacattt 288  Q
    |||||||| |||| |||||||||||||||||||||||    
T  34357439 taaatactacctccgttcctttttaattgtcacattt 34357403  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 288
Target Start/End: Complemental strand, 1859348 - 1859315
Alignment:
Q  255 atactccctcggttcctttttaattgtcacattt 288  Q
    ||||||||||||||||||||||||| ||||||||    
T  1859348 atactccctcggttcctttttaattatcacattt 1859315  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Complemental strand, 29831014 - 29830978
Alignment:
Q  252 taaatactccctcggttcctttttaattgtcacattt 288  Q
    |||||||| |||| |||||||||||||||||||||||    
T  29831014 taaatactacctccgttcctttttaattgtcacattt 29830978  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 252 - 288
Target Start/End: Original strand, 2888447 - 2888483
Alignment:
Q  252 taaatactccctcggttcctttttaattgtcacattt 288  Q
    |||||||| |||| |||||||||||||||||||||||    
T  2888447 taaatactacctccgttcctttttaattgtcacattt 2888483  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 8456895 - 8456927
Alignment:
Q  256 tactccctcggttcctttttaattgtcacattt 288  Q
    ||||||||| |||||||||||||||||||||||    
T  8456895 tactccctccgttcctttttaattgtcacattt 8456927  T

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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 34603884 - 34603852
Alignment:
Q  256 tactccctcggttcctttttaattgtcacattt 288  Q
    ||||||||| |||||||||||||||||||||||    
T  34603884 tactccctctgttcctttttaattgtcacattt 34603852  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 1201043 - 1201075
Alignment:
Q  256 tactccctcggttcctttttaattgtcacattt 288  Q
    ||||||||| |||||||||||||||||||||||    
T  1201043 tactccctccgttcctttttaattgtcacattt 1201075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 256 - 288
Target Start/End: Original strand, 47843832 - 47843864
Alignment:
Q  256 tactccctcggttcctttttaattgtcacattt 288  Q
    ||||||||| |||||||||||||||||||||||    
T  47843832 tactccctctgttcctttttaattgtcacattt 47843864  T

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