View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_low_19 (Length: 282)
Name: NF9200_low_19
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_low_19 |
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Alignment Details
Target: chr5 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 266
Target Start/End: Original strand, 22811509 - 22811775
Alignment:
| Q |
1 |
catagttaatgaaactatgaggttggtgactgatttctacaagttgtaaagaattatgataaatggaattgattagagtttaatgaagttgtgaggtagg |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
22811509 |
catagttaatgaaactatgaggttggtgactgatttctacaagttgtaaagaattatgataaatggaattgattagaggttaatgaagttgtgaggtagg |
22811608 |
T |
|
| Q |
101 |
tgatttgtttggtctttggatcatatttgcattcaaattttgaaaggagttatgaattctgattagatggaaagttaggagggatgtgaaaagcaataca |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| |
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| T |
22811609 |
tgatttgtttggtctttggatcatatttgcattcaaattttgaaaggagttatgaattctgattagatggaaagttatgagggatgtgaaaagcagcaca |
22811708 |
T |
|
| Q |
201 |
aatcaaggg-taaaaaagagattttgatggaaggcaaacctggagttgaagtaatcgattttcaaaa |
266 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
22811709 |
aatcaagggcaaaaaaagagattttgatggaaggcaaacctggagttgaagaaatcgattttcaaaa |
22811775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 2 - 247
Target Start/End: Original strand, 33937641 - 33937887
Alignment:
| Q |
2 |
atagttaatgaaactatgaggttggtgactg-atttctacaagttgtaaagaattatgataaatggaattgattagagtttaatgaagttgtgaggtagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| | ||| | | |||| |||||||||||| | ||||||||| |||||||| |||||||||||||||| |
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| T |
33937641 |
atagttaatgaaactatgaggttggtgaacgtattaatttgatttgtgaagaattatgatgagatgaattgatttgagtttaaagaagttgtgaggtagg |
33937740 |
T |
|
| Q |
101 |
tgatttgtttggtctttggatcatatttgcattcaaattttgaaaggagttatgaattctgattagatggaaagttaggagggatgtgaaaagcaataca |
200 |
Q |
| |
|
||||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||| |||| |
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| T |
33937741 |
tgatttgttaggtctgtgaatcatatttgcattcaaattttgaaaggagttatgaattctgattagatggaaagtgacgagggaggtgaaaagcagtaca |
33937840 |
T |
|
| Q |
201 |
aatcaagggtaaaaaagagattttgatggaaggcaaacctggagttg |
247 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||| ||||| |
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|
| T |
33937841 |
aatcaagggcaaaaaagagattttgatggaaggcaaacctgcagttg |
33937887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 130; Significance: 2e-67; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 2 - 266
Target Start/End: Complemental strand, 29843117 - 29842853
Alignment:
| Q |
2 |
atagttaatgaaactatgaggttggtgactgatttc-tacaagttgtaaagaattatgataaatggaattgattagagtttaatgaagttgtgaggtagg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| || || | | |||| |||||||||||| | ||||||||| |||||||| |||||||||||||||| |
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|
| T |
29843117 |
atagttaatgaaactatgaggttggtgaacgaattaatttgatttgtgaagaattatgatgagatgaattgatttgagtttaaagaagttgtgaggtagg |
29843018 |
T |
|
| Q |
101 |
tgatttgtttggtctttggatcatatttgcattcaaattttgaaaggagttatgaattctgattagatggaaagttaggagggatgtgaaaagcaataca |
200 |
Q |
| |
|
||||||||| ||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||| |||||||| | || | |
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|
| T |
29843017 |
tgatttgttaggtctgtgaatcatatttgcattcaaattttgaaaggagttatgaattttgattagatggaaagtgatgagggaggtgaaaagtagtata |
29842918 |
T |
|
| Q |
201 |
aatcaagggtaaaaaagagattttgatggaaggcaaacctggagttgaagtaatcgattttcaaaa |
266 |
Q |
| |
|
||||||||| |||||| |||||||||||||||||||||||| ||||| || |||| |||||||||| |
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|
| T |
29842917 |
aatcaagggcaaaaaaaagattttgatggaaggcaaacctgcagttggag-aatcaattttcaaaa |
29842853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 108; Significance: 3e-54; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 120 - 263
Target Start/End: Complemental strand, 5927879 - 5927737
Alignment:
| Q |
120 |
atcatatttgcattcaaattttgaaaggagttatgaattctgattagatggaaagttaggagggatgtgaaaagcaatacaaatcaagggtaaaaaagag |
219 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||| ||||||||| |
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|
| T |
5927879 |
atcatatttgcattcgaattttgaaacgagttatgaattctgattagatggaaagttatgagggaggtgaaaagcagtacaaatcaagggcaaaaaagag |
5927780 |
T |
|
| Q |
220 |
attttgatggaaggcaaacctggagttgaagtaatcgattttca |
263 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
5927779 |
attttgatggaaggcaaacctgcagttgaag-aatcgattttca |
5927737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 4342130 - 4342075
Alignment:
| Q |
1 |
catagttaatgaaactatgaggttggtgactgatttctacaagttgtaaagaatta |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
4342130 |
catagttaatgaaactatgaggttggtgaccgatttctacaagttgtgaagaatta |
4342075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 19644252 - 19644197
Alignment:
| Q |
1 |
catagttaatgaaactatgaggttggtgactgatttctacaagttgtaaagaatta |
56 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
19644252 |
catagttaatgaaactatgaggttggtgactgatttctacaagttgtgaagaatta |
19644197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 7009204 - 7009149
Alignment:
| Q |
1 |
catagttaatgaaactatgaggttggtgactgatttctacaagttgtaaagaatta |
56 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
7009204 |
catagttaatgaaactatgaggttggtgaccgatttctacaagttgtgaagaatta |
7009149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 214 - 266
Target Start/End: Original strand, 7231343 - 7231394
Alignment:
| Q |
214 |
aaagagattttgatggaaggcaaacctggagttgaagtaatcgattttcaaaa |
266 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||| ||||||||||||||| |
|
|
| T |
7231343 |
aaagagattttgatggaaggcaaa-ctgcagttgaagaaatcgattttcaaaa |
7231394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 22694790 - 22694735
Alignment:
| Q |
1 |
catagttaatgaaactatgaggttggtgactgatttctacaagttgtaaagaatta |
56 |
Q |
| |
|
||||||||||||||||||||||||| |||| ||||||||||||||| |||||||| |
|
|
| T |
22694790 |
catagttaatgaaactatgaggttgatgaccaatttctacaagttgtgaagaatta |
22694735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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