View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_low_24 (Length: 250)
Name: NF9200_low_24
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_low_24 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 155; Significance: 2e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 250
Target Start/End: Original strand, 11029289 - 11029523
Alignment:
| Q |
16 |
acaagcacacatataggtggggattagcatggaaagttaatattaatcattagatcaggtaaagaacacaatcatatttacactcttaatactagannnn |
115 |
Q |
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| T |
11029289 |
acaagcaggcatataggtggggattagcatggaaagttaatgttaaccattagatcaggtaaagaacacaatcgtatttacactcttaatactagatttt |
11029388 |
T |
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| Q |
116 |
nnnngtcaccatctctctccttcaatattatattcaatctcttaacttaaatataaaaactaaacattttccgaaattaaaacttaaacatttttccacg |
215 |
Q |
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| T |
11029389 |
ttttgtcaccatctctctccttcaatattatatccaatgttttaacttaagtataaaaacaaaacattccccgaaattaaaacttaaacatttttccacg |
11029488 |
T |
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| Q |
216 |
tttataatccatatctcaaaaaataaaatatgtct |
250 |
Q |
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| T |
11029489 |
cttataatccagatctcaaaaaataaaatatgtct |
11029523 |
T |
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Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 46 - 101
Target Start/End: Complemental strand, 11029845 - 11029789
Alignment:
| Q |
46 |
ggaaagttaatattaatcattagatcaggtaaagaacacaatcatatt-tacactct |
101 |
Q |
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| T |
11029845 |
ggaaagtaaatattagacattagatcaagtaaagaacacaatcttattatacactct |
11029789 |
T |
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