View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_low_27 (Length: 239)
Name: NF9200_low_27
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_low_27 |
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Alignment Details
Target: chr4 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 19078251 - 19078473
Alignment:
| Q |
1 |
tatctaaaatcagataaatcaaaagtgttatgctctccatcataaacattaatgcttaaagttggatttggattcaagtcaaaagggaattgatgaacaa |
100 |
Q |
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| T |
19078251 |
tatctaaaatcagataaatcaaaagtgttatgctctccatcataaacattaatgcttaaagttggatttggattcaagtcaaaagggaattgatgaacaa |
19078350 |
T |
|
| Q |
101 |
agtctttagttgcatcaaaattttcaaggagaagttttcacctatgtccccataatgaaatttatcaccaagttttgaatataaaagtgttccagttttc |
200 |
Q |
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| T |
19078351 |
agtctttagttgcatcaaatttttcaaggagaagttttcacctgttttcccataatgaaatttatcactaagttttcaatataaaagtgttccagttttc |
19078450 |
T |
|
| Q |
201 |
atcttaacagaaacaaaaaattt |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
19078451 |
atcttaacagaaacaaaaaattt |
19078473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 181
Target Start/End: Original strand, 18325896 - 18326038
Alignment:
| Q |
39 |
atcataaacattaatgcttaaagttggatttggattcaagtcaaaagggaattgatgaacaaagtctttagttgcatcaaaattttc-aaggagaagttt |
137 |
Q |
| |
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||||||| || |||||||||||||||| | | ||||||| |||||| |||| || |||||||||||| | | ||| || |||| || ||||||||| |
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| T |
18325896 |
atcataatcaataatgcttaaagttggttattgattcaactcaaaaaggaaatgcacaacaaagtcttttggttcattaattttttttaaagagaagttt |
18325995 |
T |
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| Q |
138 |
tcacctatgtccccataatgaaatttatcaccaagttttgaata |
181 |
Q |
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| T |
18325996 |
-cagctatgtccccataatgaaatttatcaccaagttttcaata |
18326038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 181
Target Start/End: Complemental strand, 18439501 - 18439359
Alignment:
| Q |
39 |
atcataaacattaatgcttaaagttggatttggattcaagtcaaaagggaattgatgaacaaagtctttagttgcatcaaaattttc-aaggagaagttt |
137 |
Q |
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||||||| || |||||||||||||||| | | ||||||| |||||| |||| || |||||||||||| | | ||| || |||| || ||||||||| |
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| T |
18439501 |
atcataatcaataatgcttaaagttggttattgattcaactcaaaaaggaaatgcacaacaaagtcttttggttcattaattttttttaaagagaagttt |
18439402 |
T |
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| Q |
138 |
tcacctatgtccccataatgaaatttatcaccaagttttgaata |
181 |
Q |
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|| ||||||||||||||||||||||||||||||||||| |||| |
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| T |
18439401 |
-cagctatgtccccataatgaaatttatcaccaagttttcaata |
18439359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 213
Target Start/End: Complemental strand, 17408405 - 17408194
Alignment:
| Q |
4 |
ctaaaatcagataaatcaaaagtgttatgctctccatcataaacattaatgcttaaagttggatttggattcaagtcaaaagggaattgatgaacaaagt |
103 |
Q |
| |
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||||| |||||| ||||| |||| |||| ||||||||| || || ||||| ||| ||| |||| | ||||||||||||| |||| || | ||| | |
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| T |
17408405 |
ctaaagtcagatgaatcagaagtattatcttctccatcagaatcactaatgattatagtcggatctcgattcaagtcaaaggggagctgtccaccaatct |
17408306 |
T |
|
| Q |
104 |
ctttagttgcatcaaaatttt-caaggagaagttttcacctatgtccccataatgaaatttatcaccaagttttgaatataaaagtgttcc-agttttca |
201 |
Q |
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||| || ||||| ||| |||| ||| |||||| ||||| ||||||| ||| ||||||||||||||| || ||| | |||||||| ||||| | |||||| |
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| T |
17408305 |
cttcagctgcattaaagtttttcaaagagaagctttcagctatgtcaccagaatgaaatttatcactaaatttgcagtataaaagggttccaatttttca |
17408206 |
T |
|
| Q |
202 |
tcttaacagaaa |
213 |
Q |
| |
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|||||||||||| |
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|
| T |
17408205 |
tcttaacagaaa |
17408194 |
T |
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