View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9200_low_3 (Length: 622)

Name: NF9200_low_3
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9200_low_3
NF9200_low_3
[»] chr5 (18 HSPs)
chr5 (108-622)||(24867358-24867868)
chr5 (291-525)||(40680507-40680745)
chr5 (291-423)||(26331907-26332039)
chr5 (322-423)||(26331565-26331666)
chr5 (462-622)||(26331689-26331850)
chr5 (430-621)||(12155920-12156111)
chr5 (462-622)||(26331348-26331508)
chr5 (291-606)||(40600176-40600511)
chr5 (290-428)||(42220944-42221082)
chr5 (430-618)||(42269085-42269274)
chr5 (291-422)||(11470348-11470481)
chr5 (293-422)||(42269301-42269430)
chr5 (290-422)||(12155739-12155872)
chr5 (291-428)||(34574627-34574764)
chr5 (294-367)||(1377543-1377616)
chr5 (291-392)||(30248160-30248260)
chr5 (430-483)||(39938491-39938544)
chr5 (439-526)||(42221104-42221192)
[»] chr6 (15 HSPs)
chr6 (291-622)||(10670289-10670618)
chr6 (288-526)||(31026649-31026895)
chr6 (465-621)||(30845097-30845254)
chr6 (290-411)||(78405-78526)
chr6 (434-593)||(10772539-10772698)
chr6 (290-348)||(9566469-9566527)
chr6 (291-423)||(11366388-11366517)
chr6 (465-612)||(24350488-24350636)
chr6 (290-425)||(32748026-32748161)
chr6 (290-410)||(10772383-10772498)
chr6 (430-621)||(24842828-24843018)
chr6 (300-423)||(30844920-30845043)
chr6 (556-622)||(9566641-9566707)
chr6 (378-420)||(24350727-24350769)
chr6 (291-348)||(32018602-32018659)
[»] chr3 (9 HSPs)
chr3 (291-622)||(46743157-46743507)
chr3 (290-537)||(52991655-52991920)
chr3 (292-426)||(31625481-31625616)
chr3 (291-428)||(3460922-3461059)
chr3 (290-422)||(52984831-52984964)
chr3 (430-560)||(52984642-52984774)
chr3 (496-618)||(31698943-31699065)
chr3 (290-374)||(54594301-54594381)
chr3 (430-523)||(3460808-3460901)
[»] chr8 (10 HSPs)
chr8 (290-622)||(15050310-15050659)
chr8 (457-590)||(39580354-39580487)
chr8 (290-427)||(38498865-38498999)
chr8 (433-622)||(10181747-10181936)
chr8 (434-591)||(5514964-5515122)
chr8 (291-423)||(10181587-10181718)
chr8 (290-420)||(5514802-5514932)
chr8 (290-428)||(25142523-25142661)
chr8 (290-365)||(6443322-6443397)
chr8 (291-368)||(39582135-39582211)
[»] chr1 (18 HSPs)
chr1 (291-593)||(29099063-29099382)
chr1 (291-622)||(27787011-27787360)
chr1 (290-526)||(15495507-15495749)
chr1 (291-618)||(10494319-10494666)
chr1 (291-622)||(25537235-25537582)
chr1 (291-427)||(47896349-47896485)
chr1 (290-428)||(14351715-14351854)
chr1 (290-379)||(26842700-26842787)
chr1 (291-423)||(8038864-8038995)
chr1 (291-427)||(2077918-2078054)
chr1 (298-425)||(11814179-11814306)
chr1 (430-618)||(2077703-2077891)
chr1 (290-383)||(4654197-4654290)
chr1 (465-593)||(11814323-11814451)
chr1 (290-382)||(40581081-40581172)
chr1 (493-606)||(14351498-14351611)
chr1 (519-622)||(26842240-26842343)
chr1 (291-336)||(10494262-10494307)
[»] chr2 (16 HSPs)
chr2 (291-617)||(27888299-27888643)
chr2 (290-526)||(6705140-6705381)
chr2 (291-622)||(1532826-1533174)
chr2 (290-622)||(40899749-40900100)
chr2 (308-615)||(9910115-9910442)
chr2 (465-618)||(6186566-6186720)
chr2 (430-618)||(14951132-14951320)
chr2 (464-621)||(38531651-38531808)
chr2 (290-428)||(38531893-38532033)
chr2 (290-428)||(14951372-14951511)
chr2 (291-428)||(33543927-33544060)
chr2 (41-180)||(45413814-45413952)
chr2 (291-428)||(28165388-28165525)
chr2 (291-422)||(6186802-6186933)
chr2 (430-490)||(33544081-33544141)
chr2 (184-212)||(45414120-45414148)
[»] chr7 (13 HSPs)
chr7 (294-622)||(21590807-21591152)
chr7 (290-593)||(43047997-43048320)
chr7 (291-622)||(32978745-32979092)
chr7 (298-591)||(24717545-24717848)
chr7 (290-428)||(31038619-31038757)
chr7 (290-372)||(10365417-10365499)
chr7 (291-427)||(34293892-34294025)
chr7 (296-367)||(21321530-21321601)
chr7 (531-621)||(26711907-26711998)
chr7 (290-348)||(25970010-25970068)
chr7 (430-526)||(7437148-7437245)
chr7 (350-410)||(7437048-7437108)
chr7 (291-347)||(47718826-47718882)
[»] chr4 (14 HSPs)
chr4 (291-526)||(14440735-14440979)
chr4 (291-622)||(42677871-42678218)
chr4 (290-524)||(12130140-12130392)
chr4 (462-622)||(45872837-45872997)
chr4 (294-423)||(45872652-45872781)
chr4 (291-427)||(56092788-56092924)
chr4 (293-428)||(52635137-52635273)
chr4 (298-422)||(55728146-55728271)
chr4 (470-612)||(52635364-52635506)
chr4 (465-546)||(55728364-55728446)
chr4 (290-428)||(19676137-19676275)
chr4 (290-367)||(19676903-19676980)
chr4 (355-430)||(44496494-44496567)
chr4 (290-348)||(52721860-52721918)
[»] scaffold0083 (2 HSPs)
scaffold0083 (298-425)||(2672-2799)
scaffold0083 (462-569)||(2858-2967)
[»] scaffold0974 (2 HSPs)
scaffold0974 (290-418)||(2903-3031)
scaffold0974 (499-618)||(2687-2806)
[»] scaffold0005 (1 HSPs)
scaffold0005 (291-368)||(269590-269667)


Alignment Details
Target: chr5 (Bit Score: 339; Significance: 0; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 108 - 622
Target Start/End: Complemental strand, 24867868 - 24867358
Alignment:
Q  108 ttatgttacaggttcttgctatttaaaatggaggaggaagaagatgaaagaagatatctgtagtttttcttttatcataattcacttaaaggttaattgt 207  Q
    ||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  24867868 ttatgttgcaggttcttgctatttaaaatggaggaggaagaagatcaaagaaaatatctgcagtttttcttttgtcataattcacttaaaggttaattgt 24867769  T
Q  208 gtaatgtttaaaagaaatataagacgaaaatgagacnnnnnnnnngataaaggatgaaaatattacttaannnnnnnnnctcgaagaagttaaaatgaaa 307  Q
    ||||||||| ||| |||||||||||||||||||||           ||||||||||||||| ||||||||          | ||||   |||||||||||    
T  24867768 gtaatgttttaaaaaaatataagacgaaaatgagaagaaaaagaa-ataaaggatgaaaatgttacttaattttttttttttgaag---ttaaaatgaaa 24867673  T
Q  308 tttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgtcgtgtatatgcgga 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||    
T  24867672 tttatttaaaacacaaagaatactagcaagcacaaggaatgataggttagaagacttaaaaagcagcgtacaaagaaaaaatgtgtcgtgtatatgcgga 24867573  T
Q  408 acatccaaacaaacacccatataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgccaaacaaagaagtcatcttca 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||||||||||| ||    
T  24867572 acatccaaacaaacacccatataaacaaaccaaaaacaccctcctatgcgggccctcgaaaccaataaaaactaaacgtcaaacaaagaagtcatctcca 24867473  T
Q  508 aaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactca 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||||  |||| |||||||||||||||||||||||||||| ||    
T  24867472 aaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgccaatccgttgaaaatcctctccaaaataaccatcaaacatattaaaaaccca 24867373  T
Q  608 tgtaaccgcacctta 622  Q
    |||||||||||||||    
T  24867372 tgtaaccgcacctta 24867358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 291 - 525
Target Start/End: Original strand, 40680507 - 40680745
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| |||||||||||||||||||||||| |||| | ||||||||||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||    
T  40680507 aagaaggtaaaatgaaatttatttaaaacactaagatt-ctagcaagcacaaggaatgctaggttaagagacttaaaaagcaacatacaaaggaaaagtg 40680605  T
Q  391 tgtcgtgtatatgcggaacatcca--aacaaacaccca----tataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaac 484  Q
    || ||| ||||||||||||| |||   ||||| ||  |    || ||||||||||||||||||||||  || |||| |||||||||||||||| ||||||    
T  40680606 tgccgtatatatgcggaacacccatgtacaaatacaaacttctacaaacaaaccaaaaacaccctccactgagggccctcgaaaccaataaaaactaaac 40680705  T
Q  485 gccaaacaaagaagtcatcttcaaaaaccaaagtctaaacg 525  Q
     |||||| ||| |||||||  ||||||||||||||||||||    
T  40680706 accaaaccaag-agtcatcaccaaaaaccaaagtctaaacg 40680745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 291 - 423
Target Start/End: Complemental strand, 26332039 - 26331907
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||||| ||    
T  26332039 aagaagttaaaatgaaatttatttaaaacaaatagaatcctagcaagcacaaggaatgctaggctaggagatttaaaaagcaacatacaaaggaaaagtg 26331940  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacac 423  Q
    | |||| ||||||||||||||||||||||||||    
T  26331939 tttcgtatatatgcggaacatccaaacaaacac 26331907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 322 - 423
Target Start/End: Complemental strand, 26331666 - 26331565
Alignment:
Q  322 aaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgtcgtgtatatgcggaacatccaaacaaac 421  Q
    ||||||| ||||||||||||||||||| |||| ||||||| |||||||||||| |||||||||||| ||| |||| ||||||||||||||||||||||||    
T  26331666 aaagaatcctagcaagcacaaggaatgctaggctaggagatttaaaaagcaacatacaaaggaaaagtgtttcgtatatatgcggaacatccaaacaaac 26331567  T
Q  422 ac 423  Q
    ||    
T  26331566 ac 26331565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 462 - 622
Target Start/End: Complemental strand, 26331850 - 26331689
Alignment:
Q  462 ctcgaaaccaataaaacctaaacgccaaacaaagaa-gtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaac 560  Q
    |||||||||||||||| ||| || |||||| || || ||||||| ||||||||||||||||||||  || |||||||||||||||||||||||   |||     
T  26331850 ctcgaaaccaataaaaactagacaccaaaccaataaagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaaat 26331751  T
Q  561 tgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
     |||||||||  |||  ||||||| |||||||| ||  ||||||||||||||||||||||||    
T  26331750 cgttgaaaaacatctctaaaataatcatcaaacctaccaaaaactcatgtaaccgcacctta 26331689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 430 - 621
Target Start/End: Original strand, 12155920 - 12156111
Alignment:
Q  430 aaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgccaaaca-aagaagtcatcttcaaaaaccaaagtctaaacgcat 528  Q
    |||||||||||||||||||||   || || | || |||||||||||||  ||||| |||||   |||||||||||| ||||||| ||||||||||| |      
T  12155920 aaacaaaccaaaaacaccctctactgaggcccct-gaaaccaataaaaattaaacaccaaaatcaagaagtcatctccaaaaactaaagtctaaacaccc 12156018  T
Q  529 gcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctt 621  Q
    ||||||||||| ||||||||||||||||||||  ||| |||| | || ||||||||||||||||| ||  ||||||||  |||| ||||||||    
T  12156019 gcgcaatagcagaaacaaatcttgtgtcaaaccattgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgcgtaatcgcacctt 12156111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 462 - 622
Target Start/End: Complemental strand, 26331508 - 26331348
Alignment:
Q  462 ctcgaaaccaataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaact 561  Q
    |||||||||||||||| ||| || |||||| || ||||||||| ||||||||||||||||||||  || |||||||||||||||||||||||   |||      
T  26331508 ctcgaaaccaataaaaactagacaccaaaccaataagtcatctccaaaaaccaaagtctaaacgtctgtgcaatagcataaacaaatcttgtacgaaatc 26331409  T
Q  562 gttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    |||||||||  |||  ||||||| |||||||| ||  |||||  ||||||||| |||||||    
T  26331408 gttgaaaaacatctctaaaataatcatcaaacctaccaaaaatccatgtaacctcacctta 26331348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 291 - 606
Target Start/End: Complemental strand, 40600511 - 40600176
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| |||||| || |||||| ||||| |||||||| ||||||| || |||||||| | |||||||||||||||  || ||  |||||||||||| ||    
T  40600511 aagaagctaaaataaagtttattcaaaacgcaaagaatcctagcaaacataaggaatgtttggttaggagacttaagtaggaatatacaaaggaaaagtg 40600412  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccat-------------------ataaacaaaccaaaaacaccctcctatgcgggctctcgaaacca 471  Q
    ||  ||||||||| |||||| |||||||||||| |||                   | ||||||||||||||||||||||   | |||| |  |||||||    
T  40600411 tggtgtgtatatgtggaacacccaaacaaacactcatgcatcaaatacaaacttcaacaaacaaaccaaaaacaccctccaccgagggcccctgaaacca 40600312  T
Q  472 ataaaacctaaacgcca-aacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaa 570  Q
    |||||| |||||| ||| ||| || ||||||||| |||||| |||||| | ||||| |  ||||||||| |||||| ||||||| ||||| |||| ||||    
T  40600311 ataaaaactaaacaccagaaccaaaaagtcatctccaaaaatcaaagtatgaacgcctaagcaatagcaaaaacaagtcttgtgccaaaccgttgcaaaa 40600212  T
Q  571 tctctacaaaataaccatcaaacatattaaaaactc 606  Q
     |  | ||||||||||||||||| ||  ||||||||    
T  40600211 cccgtccaaaataaccatcaaacctaccaaaaactc 40600176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 428
Target Start/End: Original strand, 42220944 - 42221082
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| |||||||||||| ||| ||||| |||||||| ||||| ||||| ||||| | |||| ||||||||||||| |||||| ||||||||||||||    
T  42220944 gaagaagctaaaatgaaattaattcaaaacgcaaagaatcctagctagcacgaggaaggctaggctaggagacttaaatagcaacatacaaaggaaaaat 42221043  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    ||  | | | |||||||||||   |||||||||| ||||    
T  42221044 gtaccatatgtatgcggaacactaaaacaaacactcata 42221082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 430 - 618
Target Start/End: Complemental strand, 42269274 - 42269085
Alignment:
Q  430 aaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgcca-aacaaagaagtcatcttcaaaaaccaaagtctaaacgcat 528  Q
    ||||||||||||||||||||||  || | || | | |||||||||||| || ||| ||  ||| || ||||||||| ||||||||||| ||||||||| |    
T  42269274 aaacaaaccaaaaacaccctccattgagagccccccaaaccaataaaaactgaacaccgtaaccaaaaagtcatctccaaaaaccaaattctaaacgcct 42269175  T
Q  529 gcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcac 618  Q
    | ||||||| | |||||| ||||||| |||||||||| |||| |  | ||||||||||||||| | ||  ||||||||  ||||||||||    
T  42269174 gagcaatagtagaaacaagtcttgtgccaaactgttgcaaaacccatccaaaataaccatcaatcctaccaaaaactcgggtaaccgcac 42269085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 422
Target Start/End: Original strand, 11470348 - 11470481
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaa-tactagcaagcacaaggaatgataggttaggagacttaaaa-agcaacgtacaaaggaaaaa 388  Q
    |||||| ||||||||||||||||||||||||||| || | | | | |||| ||| |||| || | |||||| ||||||| |||||| ||||||||||||     
T  11470348 aagaagctaaaatgaaatttatttaaaacacaaaaaaattccaacgagcataagaaatgctaagctaggagtcttaaaatagcaacatacaaaggaaaag 11470447  T
Q  389 tgtgtcgtgtatatgcggaacatccaaacaaaca 422  Q
    |||||||| ||||| | || |||| |||||||||    
T  11470448 tgtgtcgtatatatacagagcatctaaacaaaca 11470481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 293 - 422
Target Start/End: Complemental strand, 42269430 - 42269301
Alignment:
Q  293 gaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtg 392  Q
    |||| ||||||||| |||||| ||||| ||||||||  ||||||||| |||||||| |  | ||||||||||||  || ||| |||| || |||| ||||    
T  42269430 gaagctaaaatgaagtttattcaaaacgcaaagaatcttagcaagcataaggaatgcttagctaggagacttaagtaggaacatacagagaaaaagtgtg 42269331  T
Q  393 tcgtgtatatgcggaacatccaaacaaaca 422  Q
    | || |||||||||||||  ||||||||||    
T  42269330 ttgtatatatgcggaacactcaaacaaaca 42269301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 290 - 422
Target Start/End: Original strand, 12155739 - 12155872
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaa-aagcaacgtacaaaggaaaaa 388  Q
    ||||||| |||||||||||||||| ||||  |||||||| ||||| | ||||||||||| |||  |||||  ||||||  |||||| ||||||| ||||     
T  12155739 gaagaagctaaaatgaaatttattcaaaatgcaaagaatcctagcgatcacaaggaatgctagactaggaatcttaaagtagcaacatacaaagaaaaag 12155838  T
Q  389 tgtgtcgtgtatatgcggaacatccaaacaaaca 422  Q
    || | ||| | |||||||||||  ||||||||||    
T  12155839 tgcgccgtatgtatgcggaacactcaaacaaaca 12155872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 428
Target Start/End: Complemental strand, 34574764 - 34574627
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    ||||||||||||| ||||||| | |||||  ||||||| ||| | ||||| || |||| |||  ||||| ||||||| |||||| ||||||| |||| ||    
T  34574764 aagaagttaaaataaaatttactcaaaacgtaaagaatcctatctagcacgagtaatgctagactaggatacttaaatagcaacatacaaagaaaaagtg 34574665  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    |||||| ||||  |||||||  ||| ||||||| ||||    
T  34574664 tgtcgtatatacacggaacactcaagcaaacactcata 34574627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 294 - 367
Target Start/End: Original strand, 1377543 - 1377616
Alignment:
Q  294 aagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaa 367  Q
    |||||||||||||||||||| ||| | |||  |||  || | ||||||||||||| ||||||||||| ||||||    
T  1377543 aagttaaaatgaaatttattcaaatcgcaattaatcttaaccagcacaaggaatgttaggttaggagtcttaaa 1377616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 392
Target Start/End: Original strand, 30248160 - 30248260
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||||||||||||||||| || ||||| |||||||| ||| | ||||| || |||  || | || |||||||||| |||||| ||||||| |||| ||    
T  30248160 aagaagttaaaatgaaattt-ttcaaaacgcaaagaatcctaactagcacgagaaatactaagctatgagacttaaatagcaacatacaaagaaaaagtg 30248258  T
Q  391 tg 392  Q
    ||    
T  30248259 tg 30248260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 483
Target Start/End: Original strand, 39938491 - 39938544
Alignment:
Q  430 aaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaa 483  Q
    |||||||||||||||| |||||  || |||| |||||||||||||||| |||||    
T  39938491 aaacaaaccaaaaacaacctccattgagggccctcgaaaccaataaaaactaaa 39938544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 439 - 526
Target Start/End: Original strand, 42221104 - 42221192
Alignment:
Q  439 aaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgcc-aaacaaagaagtcatcttcaaaaaccaaagtctaaacgc 526  Q
    |||||||||||||  || |||| | |||||||||||||| |||||| || |||| |  ||||||||| | ||||||||||| |||||||    
T  42221104 aaaaacaccctccattgagggcccccgaaaccaataaaaactaaacaccaaaaccacaaagtcatctcccaaaaccaaagtataaacgc 42221192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 158; Significance: 9e-84; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 158; E-Value: 9e-84
Query Start/End: Original strand, 291 - 622
Target Start/End: Complemental strand, 10670618 - 10670289
Alignment:
Q  291 aagaagttaaaatg-aaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    |||||||||||||| ||||||||||||||| ||  |||| |||  ||||||||| |||| || ||||||||||||||||| |||| |||||||||||| |    
T  10670618 aagaagttaaaatggaaatttatttaaaaccca--gaattctaataagcacaagtaatgctaagttaggagacttaaaaaacaacatacaaaggaaaagt 10670521  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacccatataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgccaa 489  Q
     |||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||| || |  | ||||| | ||||||||||||| |||||| ||||    
T  10670520 ttgtcgtatatatgcagaacatccaaacaaacacccatatagacaaaccaaaaacaccttc-tccgagggcttttgaaaccaataaaaactaaacaccaa 10670422  T
Q  490 acaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatc 589  Q
    ||||||||||||| | ||||| |||||||||||| || |||||||||||| |||||||||||||||||||| ||||||||| |||| ||||||||| |||    
T  10670421 acaaagaagtcatatccaaaatccaaagtctaaatgcctgcgcaatagcagaaacaaatcttgtgtcaaaccgttgaaaaacctctccaaaataactatc 10670322  T
Q  590 aaacatattaaaaactcatgtaaccgcacctta 622  Q
    |||  || ||||||  |||||||||||||||||    
T  10670321 aaatctactaaaaatccatgtaaccgcacctta 10670289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 288 - 526
Target Start/End: Complemental strand, 31026895 - 31026649
Alignment:
Q  288 tcgaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaac--gtacaaaggaa 385  Q
    |||||||||||||||||||||||||||||||||| |||||| |||||||||| ||| |||| |||| ||| ||||||||||||||||   ||||||||||    
T  31026895 tcgaagaagttaaaatgaaatttatttaaaacactaagaatcctagcaagcataagaaatgttaggctagaagacttaaaaagcaacatttacaaaggaa 31026796  T
Q  386 aaatgtgtcgtgtatatgcggaaca------tccaaacaaacacccatataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacc 479  Q
    || |||| ||| ||||||| |||||      | |||| | | || | || ||||||||||||||||||||||  || |||| ||| |||||||||||| |    
T  31026795 aagtgtgccgtatatatgcagaacacccatgtacaaatacaaactcctacaaacaaaccaaaaacaccctccactgagggccctcaaaaccaataaaaac 31026696  T
Q  480 taaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgc 526  Q
    |||   |||||| || ||||| ||| |||||||||||||||||||||    
T  31026695 taataaccaaaccaataagtcgtctccaaaaaccaaagtctaaacgc 31026649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 465 - 621
Target Start/End: Original strand, 30845097 - 30845254
Alignment:
Q  465 gaaaccaataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgt 563  Q
    ||||||||||||| |||||| ||||| | || ||||||||||||||||||||||||||||| |   |||||||||| |||||||||||||||||||| ||    
T  30845097 gaaaccaataaaaactaaacaccaaaaccaaaaagtcatcttcaaaaaccaaagtctaaacacccacgcaatagcagaaacaaatcttgtgtcaaaccgt 30845196  T
Q  564 tgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctt 621  Q
    || |||| | || ||||||||||||||||| ||  |||||  || |||||||||||||    
T  30845197 tgcaaaacccctccaaaataaccatcaaacctaccaaaaatccaggtaaccgcacctt 30845254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 290 - 411
Target Start/End: Original strand, 78405 - 78526
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| ||||||||| |||||| ||||| |||||||| |||||||||||||| |||| | || ||||||||||||| || ||| |||||||||||| |    
T  78405 gaagaagctaaaatgaagtttattcaaaacgcaaagaatcctagcaagcacaagaaatgcttggctaggagacttaaataggaacatacaaaggaaaagt 78504  T
Q  390 gtgtcgtgtatatgcggaacat 411  Q
    | | ||| ||||||||||||||    
T  78505 gagccgtatatatgcggaacat 78526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 434 - 593
Target Start/End: Original strand, 10772539 - 10772698
Alignment:
Q  434 aaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgcca-aacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgc 532  Q
    ||||||||||||||||||  || |||| ||| |||||||||||| |||||| ||| ||| || ||||||||| |||||| |||||||||||||| || ||    
T  10772539 aaaccaaaaacaccctccactgagggc-ctcaaaaccaataaaaactaaacaccagaaccaaaaagtcatctccaaaaatcaaagtctaaacgcttgagc 10772637  T
Q  533 aatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaac 593  Q
    ||| ||| |||||| ||||||| ||||| |||| |||| |  | |||||||||||||||||    
T  10772638 aatggcagaaacaagtcttgtgccaaaccgttgcaaaacccatccaaaataaccatcaaac 10772698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 290 - 348
Target Start/End: Original strand, 9566469 - 9566527
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatg 348  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  9566469 gaagaagttaaaatgaaatttatttaaaacacaaagaatcctagcaagcacaaggaatg 9566527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 291 - 423
Target Start/End: Original strand, 11366388 - 11366517
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||||||||||||||||||||||||||||  |||||  ||||||||| |||||||| ||   ||  ||||||||| |||||| |||||||||||| ||    
T  11366388 aagaagttaaaatgaaatttatttaaaacac--agaattttagcaagcataaggaatgctaacctaaaagacttaaagagcaacatacaaaggaaaagtg 11366485  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacac 423  Q
    |  ||| ||||||||||||| ||||||||||||    
T  11366486 t-ccgtatatatgcggaacacccaaacaaacac 11366517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 612
Target Start/End: Complemental strand, 24350636 - 24350488
Alignment:
Q  465 gaaaccaataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgt 563  Q
    ||||||||| ||| |||||| ||||| | |||||||||||| ||||||| ||||||||||| |  ||||||||||| |||||||| |||||  |||| ||    
T  24350636 gaaaccaatcaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaactcccgcgcaatagcagaaacaaattttgtgctaaaccgt 24350537  T
Q  564 tgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaa 612  Q
    || |||| | || ||||||||||||||||| ||  |||||||| |||||    
T  24350536 tgcaaaacccctccaaaataaccatcaaacttaccaaaaactcgtgtaa 24350488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 290 - 425
Target Start/End: Complemental strand, 32748161 - 32748026
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    |||||||||||||||||||||||| ||||   |||||||  || | ||||||||||||| |||| || || ||||||| |||||| |||||||||| | |    
T  32748161 gaagaagttaaaatgaaatttattcaaaatgtaaagaatcatatctagcacaaggaatgctaggctaagatacttaaatagcaacatacaaaggaatagt 32748062  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacaccc 425  Q
    ||| ||||||||  |||||||  |||||||||||||    
T  32748061 gtgccgtgtatacacggaacactcaaacaaacaccc 32748026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 290 - 410
Target Start/End: Original strand, 10772383 - 10772498
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||||||||||||| || ||| ||||| ||||  || || |||||||||||||||| | || |||||||||     || |||||||||||||||| |    
T  10772383 gaagaagttaaaatgaagttaattcaaaacgcaaaatatccttgcaagcacaaggaatgcttggctaggagact-----aggaacgtacaaaggaaaagt 10772477  T
Q  390 gtgtcgtgtatatgcggaaca 410  Q
    ||| ||| |||||||||||||    
T  10772478 gtgccgtatatatgcggaaca 10772498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 430 - 621
Target Start/End: Original strand, 24842828 - 24843018
Alignment:
Q  430 aaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgcat 528  Q
    |||||||||||||||||||||   |  |||| | |||||||||||||| |||||| ||||| | || |||||| || |||||||||| || ||||| |      
T  24842828 aaacaaaccaaaaacaccctctactaagggccc-cgaaaccaataaaaactaaacaccaaaaccaaaaagtcagctccaaaaaccaacgtttaaacaccc 24842926  T
Q  529 gcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctt 621  Q
    | ||| ||||| ||||||||||||||  |||||||||  ||| | || ||||| ||||||||||| ||  |||||| | ||||||||||||||    
T  24842927 gagcagtagcaaaaacaaatcttgtgctaaactgttgttaaa-ccctccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcacctt 24843018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 300 - 423
Target Start/End: Original strand, 30844920 - 30845043
Alignment:
Q  300 aaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgtcgtgta 399  Q
    |||||||||||||| ||||  ||||||||  || ||||||||||||||| ||   ||| ||| ||||| |||||| || ||||||||||| | |||| ||    
T  30844920 aaatgaaatttattcaaaatgcaaagaatcttaacaagcacaaggaatgctacaatagaagatttaaatagcaacatataaaggaaaaatatatcgtata 30845019  T
Q  400 tatgcggaacatccaaacaaacac 423  Q
    |||| ||||||  |||| ||||||    
T  30845020 tatgtggaacaatcaaataaacac 30845043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 556 - 622
Target Start/End: Original strand, 9566641 - 9566707
Alignment:
Q  556 caaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    ||||| ||| |||||  ||| ||||||||||||||||| ||  |||||| |||||||||||||||||    
T  9566641 caaaccgttaaaaaacatctccaaaataaccatcaaacctaccaaaaacccatgtaaccgcacctta 9566707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 378 - 420
Target Start/End: Complemental strand, 24350769 - 24350727
Alignment:
Q  378 caaaggaaaaatgtgtcgtgtatatgcggaacatccaaacaaa 420  Q
    |||||||||| |||| ||||||||||||||||| |||||||||    
T  24350769 caaaggaaaagtgtgccgtgtatatgcggaacacccaaacaaa 24350727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 348
Target Start/End: Complemental strand, 32018659 - 32018602
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatg 348  Q
    ||||||||||||||||||||||| ||| ||||| |||| ||| | |||||||| ||||    
T  32018659 aagaagttaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaagaaatg 32018602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 3e-59; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 291 - 622
Target Start/End: Complemental strand, 46743507 - 46743157
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||| ||||| |||||| ||||||  |||| ||    
T  46743507 aagaaggtaaaatgaaatttatttaaaacacaaagaatcctagcaagcacaaggaatgctaagttaggagatttaaagagcaacatacaaacaaaaagtg 46743408  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccatata-------------------aacaaaccaaaaacaccctcctatgcgggctctcgaaacca 471  Q
    | |||| ||| |||||||||||||||||| ||||||| ||                   | ||||||||||||||| |||  || |||| ||||||||||    
T  46743407 tttcgtatatgtgcggaacatccaaacaatcacccatgtatcaaatacaaacttctacaagcaaaccaaaaacaccatccactgagggccctcgaaacca 46743308  T
Q  472 ataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaat 571  Q
    |||||| ||||||  ||||| ||||||||||||  ||||||||||||| ||||||  ||||||||||| |||||||||||||| |||||  || |||||     
T  46743307 ataaaaactaaacatcaaaccaagaagtcatctctaaaaaccaaagtccaaacgcccgcgcaatagcagaaacaaatcttgtgccaaaccattaaaaaac 46743208  T
Q  572 ctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    || | ||||||||||||||||| ||  ||||||||||| || |||||||||    
T  46743207 ctatccaaaataaccatcaaacctaccaaaaactcatgcaatcgcacctta 46743157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 290 - 537
Target Start/End: Complemental strand, 52991920 - 52991655
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||| |||||| |||| |||||||||||||||||||| |||| |||| | ||||| |    
T  52991920 gaagaagctaaaatgaaatttatttaaaacacaaagaatcctagcaaacacaagaaatgctaggttaggagacttaaaaaacaacatacacatgaaaatt 52991821  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacc--------catataaac----------aaaccaaaaacaccctcctatgcgggctctcgaaacca 471  Q
    ||||||| ||||| ||||| |  ||||||||||||         ||||||||          |||||||||||||||||||    |||||||||||||||    
T  52991820 gtgtcgtatatatacggaatacacaaacaaacaccttgtatcaaatataaacttctacaaataaaccaaaaacaccctcctcgaagggctctcgaaacca 52991721  T
Q  472 ataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatag 537  Q
    ||| |  |||||| |||||| |||||||||||| |||||| ||||||||||||||  |||||||||    
T  52991720 atagagactaaacaccaaaccaagaagtcatctccaaaaatcaaagtctaaacgcccgcgcaatag 52991655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 292 - 426
Target Start/End: Original strand, 31625481 - 31625616
Alignment:
Q  292 agaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaa-agcaacgtacaaaggaaaaatg 390  Q
    |||||||||||||||||||||| ||||| ||||||||  |||| ||||||||||||  |||  ||||||  |||| | |||||| |||||||||||| ||    
T  31625481 agaagttaaaatgaaatttattcaaaacgcaaagaatcatagcgagcacaaggaatactagactaggagttttaatatagcaacatacaaaggaaaagtg 31625580  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacaccca 426  Q
    |||||| |||||| |||||| |||||||||||||||    
T  31625581 tgtcgtatatatgtggaacacccaaacaaacaccca 31625616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 291 - 428
Target Start/End: Complemental strand, 3461059 - 3460922
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    ||||||||||||||||||||||| |||||  ||||||| ||| | ||||| ||||||| |||| ||| ||||||||| |||||| |||||||||||| ||    
T  3461059 aagaagttaaaatgaaatttattcaaaacgtaaagaatcctaactagcacgaggaatgctaggctagaagacttaaatagcaacatacaaaggaaaagtg 3460960  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    |  ||| |||| ||||||||   |||||||||||||||    
T  3460959 taccgtatatacgcggaacactgaaacaaacacccata 3460922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 290 - 422
Target Start/End: Complemental strand, 52984964 - 52984831
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaa-agcaacgtacaaaggaaaaa 388  Q
    |||||||||||||||||||||||| |||||  |||||||  || | |||| |||||||| ||| ||||||  ||||||  | |||| ||||||| ||||     
T  52984964 gaagaagttaaaatgaaatttattcaaaacgtaaagaattttaacgagcataaggaatgctagattaggaatcttaaagtaacaacatacaaagaaaaag 52984865  T
Q  389 tgtgtcgtgtatatgcggaacatccaaacaaaca 422  Q
    ||||||||||||||||| |||| |||||||||||    
T  52984864 tgtgtcgtgtatatgcgaaacacccaaacaaaca 52984831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 430 - 560
Target Start/End: Complemental strand, 52984774 - 52984642
Alignment:
Q  430 aaacaaaccaaaaacaccctc-cta-tgcgggctctcgaaaccaataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgc 526  Q
    ||||||||||||||||||||| ||| || || | || ||||||| ||||| |||||| ||||| | |||||||||||| ||||||| ||||||||||| |    
T  52984774 aaacaaaccaaaaacaccctctctactgaggcccct-gaaaccattaaaaactaaacaccaaaaccaagaagtcatctgcaaaaactaaagtctaaacac 52984676  T
Q  527 atgcgcaatagcataaacaaatcttgtgtcaaac 560  Q
      ||||||||||| |||||||||||||| |||||    
T  52984675 ccgcgcaatagcagaaacaaatcttgtgccaaac 52984642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 496 - 618
Target Start/End: Original strand, 31698943 - 31699065
Alignment:
Q  496 aagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacat 595  Q
    |||| |||| |||||||||||||||||| || |  |||||| ||||||||| |||||||||||||||||| |||| |  | |||||||||||| || | |    
T  31698943 aagtaatctccaaaaaccaaagtctaaatgcctaagcaataacataaacaagtcttgtgtcaaactgttgcaaaacccatccaaaataaccatgaatcct 31699042  T
Q  596 attaaaaactcatgtaaccgcac 618  Q
    |  |||||| | |||||||||||    
T  31699043 accaaaaacccgtgtaaccgcac 31699065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 374
Target Start/End: Complemental strand, 54594381 - 54594301
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaac 374  Q
    ||||||||||||||| |||||||    |||  ||||||| |||||||| | |||||||| |||  ||||||||||||||||||||    
T  54594381 gaagaagttaaaatggaatttat----aacgtaaagaatcctagcaagaataaggaatgctagactaggagacttaaaaagcaac 54594301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 430 - 523
Target Start/End: Complemental strand, 3460901 - 3460808
Alignment:
Q  430 aaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgcc-aaacaaagaagtcatcttcaaaaaccaaagtctaaa 523  Q
    |||||||||||||||||||||| | |  ||| |||||||||||||||| |||||| || |||| |  ||||||||||| | ||||||||| ||||    
T  3460901 aaacaaaccaaaaacaccctcc-acggaggccctcgaaaccaataaaaactaaacaccaaaaccacaaagtcatcttccacaaccaaagtataaa 3460808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 2e-53; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 290 - 622
Target Start/End: Complemental strand, 15050659 - 15050310
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| ||||||||||||||||||| |  |||||||| ||||||||||||||||||| |||| ||||||| ||||||| |||| |||| ||||||| |    
T  15050659 gaagaagctaaaatgaaatttatttaacatgcaaagaattctagcaagcacaaggaatgctaggctaggagaattaaaaaacaacatacacaggaaaagt 15050560  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacccatata-------------------aacaaaccaaaaacaccctcctatgcgggctctcgaaacc 470  Q
    ||| ||| |||||||||||||  ||||||||||||||| ||                   ||||||||||||||||||| |   | |||  |||||||||    
T  15050559 gtgccgtatatatgcggaacacacaaacaaacacccatgtatcaaatacaaacttctacaaacaaaccaaaaacacccttcacggagggtcctcgaaacc 15050460  T
Q  471 aataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaa 570  Q
    |||| |  |||||| |||||| ||||| ||||||  ||||| |||||||||||||| | |||||||||| ||||||||||||||||| || |||||||||    
T  15050459 aatagagactaaacaccaaaccaagaaatcatctaaaaaaatcaaagtctaaacgcctacgcaatagcagaaacaaatcttgtgtcataccgttgaaaaa 15050360  T
Q  571 tctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
     |||| |  |||||||||||||| ||  ||||||||||||||||||||||||    
T  15050359 cctctcc--aataaccatcaaacctaccaaaaactcatgtaaccgcacctta 15050310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 457 - 590
Target Start/End: Complemental strand, 39580487 - 39580354
Alignment:
Q  457 gggctctcgaaaccaataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtc 556  Q
    |||| ||| ||||||||| || |||||| | |||| |||||||||||| ||||||||||||||||||||  ||| |||||||||||||||||||||||||    
T  39580487 gggccctcaaaaccaatataaactaaacactaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcacaatagcataaacaaatcttgtgtc 39580388  T
Q  557 aaactgttgaaaaatctctacaaaataaccatca 590  Q
    |||| |||||||||||| | ||||||||||||||    
T  39580387 aaaccgttgaaaaatctatccaaaataaccatca 39580354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 290 - 427
Target Start/End: Original strand, 38498865 - 38498999
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||| || |  |  ||||||||| |||||| ||||||||||||      
T  38498865 gaagaagttaaaatgaaatttatttaaaacacaaagaatcctagcaagcacagggaatgttaagccataagacttaaagagcaacatacaaaggaaaa-- 38498962  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacccat 427  Q
    |||||  | |||||||||||| ||||||||||||||||    
T  38498963 gtgtc-cgcatatgcggaacacccaaacaaacacccat 38498999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 433 - 622
Target Start/End: Original strand, 10181747 - 10181936
Alignment:
Q  433 caaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgc 532  Q
    |||||||||||||||||||   | |||| ||| |||||||||||| ||||||  ||||| |||||||||||| ||||||  |||| | |||||  || |     
T  10181747 caaaccaaaaacaccctccaccgagggccctcaaaaccaataaaaactaaacttcaaaccaagaagtcatctccaaaaattaaagaccaaacgactggga 10181846  T
Q  533 aatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    ||||||||||||||||| |||| ||||| ||| ||||| |||| ||||||| ||||||||| ||  |||||  |||||||||||||||||    
T  10181847 aatagcataaacaaatcatgtgccaaaccgttaaaaaacctctccaaaatagccatcaaacctaccaaaaatccatgtaaccgcacctta 10181936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 434 - 591
Target Start/End: Original strand, 5514964 - 5515122
Alignment:
Q  434 aaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgcca-aacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgc 532  Q
    ||||||||||||||||||  || |||| | | ||||||||||||  |||||  |  ||| || ||||||||| ||||||||||| |||||| || || ||    
T  5514964 aaaccaaaaacaccctccactgagggccccccaaaccaataaaaattaaacatcgtaaccaaaaagtcatctccaaaaaccaaattctaaatgcctgagc 5515063  T
Q  533 aatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaa 591  Q
    ||||| | |||||| ||||||| |||||||||| ||||||  | |||||||||||||||    
T  5515064 aatagtagaaacaagtcttgtgccaaactgttgcaaaatccatccaaaataaccatcaa 5515122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 423
Target Start/End: Original strand, 10181587 - 10181718
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| |||||||||||||||| |||||||||||||| ||| |||| | ||| |||| || | || ||||||| ||||||||| ||||||||| || ||    
T  10181587 aagaagctaaaatgaaatttattgaaaacacaaagaatcctaacaagtataagaaatgttaagctaagagactt-aaaagcaacatacaaaggagaagtg 10181685  T
Q  391 tgtcgtgtatatgcggaacatcc-aaacaaacac 423  Q
    | | || |||||||||||||||| ||||||||||    
T  10181686 tct-gtatatatgcggaacatccaaaacaaacac 10181718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 290 - 420
Target Start/End: Original strand, 5514802 - 5514932
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| ||||||||| |||||| ||||| ||||||||   ||||||||||| ||||| |    ||||||||||||  || ||| ||||||| || | |    
T  5514802 gaagaaggtaaaatgaagtttattcaaaacgcaaagaatctaagcaagcacaaagaatgcttaactaggagacttaagtaggaacatacaaagaaagagt 5514901  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaa 420  Q
    ||||||| ||||||||||||| |||||||||    
T  5514902 gtgtcgtatatatgcggaacacccaaacaaa 5514932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 290 - 428
Target Start/End: Original strand, 25142523 - 25142661
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| |||||||||||||||| |||||| |||||||  || | |||| |||||||| |||  || || ||||||| | ||||  ||||||||||| |    
T  25142523 gaagaagctaaaatgaaatttattcaaaacataaagaatcttatctagcataaggaatgctagactaagatacttaaataacaacaaacaaaggaaaagt 25142622  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    ||||||| |||   |||||||  ||||||||||| ||||    
T  25142623 gtgtcgtatatccacggaacactcaaacaaacactcata 25142661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 365
Target Start/End: Original strand, 6443322 - 6443397
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagactta 365  Q
    ||||||| |||||||||||||||| ||| ||||| |||| ||| | |||||||||| || |||| |||||| ||||    
T  6443322 gaagaagctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggagtgctaggctaggagtctta 6443397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 291 - 368
Target Start/End: Complemental strand, 39582211 - 39582135
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaa 368  Q
    |||||| |||||| |||||||||||||| ||| | ||| ||| ||||||||| ||||| |||| || |||||||||||    
T  39582211 aagaagctaaaataaaatttatttaaaa-acacacaatcctaacaagcacaaagaatgctaggctatgagacttaaaa 39582135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 105; Significance: 4e-52; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 291 - 593
Target Start/End: Original strand, 29099063 - 29099382
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||||||||||||| |||| |||| |   ||| ||    
T  29099063 aagaagttaaaatgaaatttatttaaaacacaaagaatcctagcaagcacaaggaacgctaggctaggagacttaaaaaacaacatacacac--aaagtg 29099160  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccatata-------------------aacaaaccaaaaacaccctcctatgcgggctctcgaaacca 471  Q
    || ||| ||||||||||||||  |||||||||| ||| ||                   |||||||||||||||||||||  || |||| ||||||||||    
T  29099161 tgccgtatatatgcggaacatataaacaaacactcatgtatcaaatacaaacttctacgaacaaaccaaaaacaccctccactgagggccctcgaaacca 29099260  T
Q  472 ataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaat 571  Q
    ||| |  |||||| ||  || |||||||||||| ||||||||||||||||||||  ||||||||||||||||||||| ||||| || |  |||||||||     
T  29099261 atagagactaaacaccgcaccaagaagtcatctccaaaaaccaaagtctaaacgtttgcgcaatagcataaacaaattttgtgccatatcgttgaaaaac 29099360  T
Q  572 ctctacaaaataaccatcaaac 593  Q
    |||| |||||||||||||||||    
T  29099361 ctctccaaaataaccatcaaac 29099382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 291 - 622
Target Start/End: Complemental strand, 27787360 - 27787011
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| |||||||||||||||||||| ||||||||||  |||||||||||||||||| || | ||||||||||||| | |||| |||||| ||||| ||    
T  27787360 aagaagctaaaatgaaatttatttaaagcacaaagaatcttagcaagcacaaggaatgctaagctaggagacttaaagaacaacatacaaacgaaaagtg 27787261  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccatata-------------------aacaaaccaaaaacaccctcctatgcgggctctcgaaacca 471  Q
    |  | | ||||||||||||| ||||||||||| |||| ||                   | |||| ||||||||||||||  || |||| ||||||||||    
T  27787260 tc-catatatatgcggaacacccaaacaaacagccatgtatcaaatacaaacttctacaagcaaatcaaaaacaccctccactgagggccctcgaaacca 27787162  T
Q  472 ataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaat 571  Q
    |||||| |||||| |||||| |||||||||||| |||||||||||||| |||||  |||||||||||| |||||||||||  | |||||  || |||||     
T  27787161 ataaaaactaaacaccaaaccaagaagtcatctccaaaaaccaaagtccaaacgtctgcgcaatagcagaaacaaatcttaagccaaaccattaaaaaac 27787062  T
Q  572 ctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    |||| ||||||||||||||||| ||  |||||| |||||||| ||||||||    
T  27787061 ctctccaaaataaccatcaaacctaccaaaaacccatgtaactgcacctta 27787011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 290 - 526
Target Start/End: Original strand, 15495507 - 15495749
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| |||||||||||||||||||||||| ||||||  ||||| ||||||| |||| |||| |||||||||||||||||||| |||||||||||| |    
T  15495507 gaagaagctaaaatgaaatttatttaaaacactaagaatcatagcatgcacaagaaatgctaggctaggagacttaaaaagcaacatacaaaggaaaagt 15495606  T
Q  390 gtgtcgtgtatatgcggaacatcca--aacaa----acacccatataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaa 483  Q
    ||| | | ||||||||||||| |||   ||||    | ||   || ||||||| ||||||||||||||  || |||| ||||||| |||||||| |||||    
T  15495607 gtgccttatatatgcggaacacccatgtacaaatgcaaacttctacaaacaaatcaaaaacaccctccactgagggccctcgaaagcaataaaaactaaa 15495706  T
Q  484 cgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgc 526  Q
    | |||||| |||||||||||  |||||||||||||||||||||    
T  15495707 caccaaaccaagaagtcatcaccaaaaaccaaagtctaaacgc 15495749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 291 - 618
Target Start/End: Original strand, 10494319 - 10494666
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| |||||||||||||||| ||||| |||||||| |||||||||||||||||||   || ||||||||||||| |||||| |||||||||||| ||    
T  10494319 aagaagctaaaatgaaatttattcaaaacgcaaagaatcctagcaagcacaaggaatgtctggctaggagacttaaatagcaacatacaaaggaaaagtg 10494418  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacaccca-------------------tataaacaaaccaaaaacaccctcctatgcgggctctcgaaacca 471  Q
    ||| || ||||||| ||||| |||||||||||| ||                   || |||||||||||||| |||||||  |  |||||| ||||||||    
T  10494419 tgttgtatatatgcagaacacccaaacaaacactcatacatcaaatacaaacttctacaaacaaaccaaaaataccctccactaagggctcccgaaacca 10494518  T
Q  472 ataaaacctaaac-gccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaa 570  Q
    |||||| ||||||  | ||||  | ||||||||| |||||| |||||||||||||| |  ||||||||| |||||||||||||| |||||  ||| ||||    
T  10494519 ataaaaactaaacaacaaaacccaaaagtcatctccaaaaatcaaagtctaaacgcctttgcaatagcagaaacaaatcttgtgccaaaccattgcaaaa 10494618  T
Q  571 tctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcac 618  Q
     | ||| |||||||||||||||| ||  |||||  | |||||||||||    
T  10494619 cccctataaaataaccatcaaacctaccaaaaatccgtgtaaccgcac 10494666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 291 - 622
Target Start/End: Original strand, 25537235 - 25537582
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagactt-aaaaagcaacgtacaaaggaaaaat 389  Q
    |||||| |||||||| |||||||||| |  |||||||| ||||||||||||| ||||| |||| |||||||||| ||||| |||| |||| ||||||| |    
T  25537235 aagaagctaaaatgatatttatttaacatgcaaagaatcctagcaagcacaaagaatgctaggctaggagacttaaaaaaacaacatacacaggaaaagt 25537334  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacaccca-------------------tataaacaaaccaaaaacaccctcctatgcgggctctcgaaacc 470  Q
    ||||||| |||||||||||||  ||||||||||||||                   || |||||||||||||||||| |||   | |||  ||||||| |    
T  25537335 gtgtcgtatatatgcggaacacacaaacaaacacccatgtatcaaatacaaacttctacaaacaaaccaaaaacaccttccacggagggtcctcgaaa-c 25537433  T
Q  471 aataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaa 570  Q
    |||| |  |||||| |||||| ||||| ||||| | ||||| |||||||||||||| | || ||||||| ||||||||||||||||| || |||||||||    
T  25537434 aatagagactaaacaccaaaccaagaaatcatc-taaaaaatcaaagtctaaacgcctacgaaatagcagaaacaaatcttgtgtcataccgttgaaaaa 25537532  T
Q  571 tctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
     |||| |  |||||||||||||| ||  ||||||||||||||||||||||||    
T  25537533 cctctcc--aataaccatcaaacctaccaaaaactcatgtaaccgcacctta 25537582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 291 - 427
Target Start/End: Original strand, 47896349 - 47896485
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaa-agcaacgtacaaaggaaaaat 389  Q
    |||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||| || ||||| |||||||||| |||||| ||||||| |||| |    
T  47896349 aagaagttaaaatgaaatttatttaaaatacaaagaatcctagcaagcataaggaatgttaagttagaagacttaaaagagcaacatacaaagaaaaagt 47896448  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacccat 427  Q
    ||  ||| ||||||||||||||||||||||||||||||    
T  47896449 gt-ccgtatatatgcggaacatccaaacaaacacccat 47896485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 290 - 428
Target Start/End: Complemental strand, 14351854 - 14351715
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaa-agcaacgtacaaaggaaaaa 388  Q
    ||||||| |||||||||||||||| ||||  |||||||| ||||| ||||||||||||| |||  |||||  ||||||  |||||| ||||||||||||     
T  14351854 gaagaagctaaaatgaaatttattcaaaatgcaaagaatcctagcgagcacaaggaatgctagactaggaatcttaaagtagcaacatacaaaggaaaag 14351755  T
Q  389 tgtgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    |||||||| ||||||||||||| ||||||||||| |||||    
T  14351754 tgtgtcgtatatatgcggaacacccaaacaaacaaccata 14351715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 290 - 379
Target Start/End: Original strand, 26842700 - 26842787
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtaca 379  Q
    ||||||| |||||||||||||||||||||||||  |||| ||||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  26842700 gaagaagctaaaatgaaatttatttaaaacaca--gaatcctagcaagcacaaggaatgctaggttaggagacttaaaaagcaacataca 26842787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 291 - 423
Target Start/End: Original strand, 8038864 - 8038995
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| ||||||||||||||||||||||||||| ||| ||||||||||||||||||| || | ||| ||||||||| | || | || ||||||||| ||    
T  8038864 aagaagctaaaatgaaatttatttaaaacacaaaaaatcctagcaagcacaaggaatgctaagctagaagacttaaagaacaccatataaaggaaaagtg 8038963  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacac 423  Q
    | | || ||||||||||||| ||||||||||||    
T  8038964 tat-gtatatatgcggaacacccaaacaaacac 8038995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 291 - 427
Target Start/End: Complemental strand, 2078054 - 2077918
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| ||||||||| |||||| ||||  |||||||| ||||||| || |||||||| | || ||||||||||||  || ||| | |||||||||| ||    
T  2078054 aagaaggtaaaatgaagtttattcaaaatgcaaagaatcctagcaaacataaggaatgcttggctaggagacttaagtaggaacatgcaaaggaaaactg 2077955  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccat 427  Q
    |||||| ||||||||||| | ||||||||||||||||    
T  2077954 tgtcgtatatatgcggaaaacccaaacaaacacccat 2077918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 298 - 425
Target Start/End: Original strand, 11814179 - 11814306
Alignment:
Q  298 taaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgtcgtg 397  Q
    |||||||||||||||| ||||| |||||||| ||| |||||| |||||| | | || ||||||||||||| |||||| |||||||||| | |||| | |     
T  11814179 taaaatgaaatttattcaaaacgcaaagaatcctaacaagcagaaggaaagcttggctaggagacttaaatagcaacatacaaaggaacattgtgcctta 11814278  T
Q  398 tatatgcggaacatccaaacaaacaccc 425  Q
    |||||||| |||| ||||||||||||||    
T  11814279 tatatgcgaaacacccaaacaaacaccc 11814306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 430 - 618
Target Start/End: Complemental strand, 2077891 - 2077703
Alignment:
Q  430 aaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgcat 528  Q
    |||||||||||||||||||| |  |  |||| |  ||||||||||||| |||||| ||||| | || ||||||||| ||||||||||||||||||||  |    
T  2077891 aaacaaaccaaaaacacccttcactaagggcccctgaaaccaataaaaactaaacaccaaaaccaaaaagtcatctccaaaaaccaaagtctaaacgtct 2077792  T
Q  529 gcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcac 618  Q
    | |||||||||||||||| |||||||  |||| |||| |||| |  | |||||||| |||||||| ||   ||||||| |||||||||||    
T  2077791 gagcaatagcataaacaagtcttgtgcaaaaccgttgcaaaacccatccaaaataatcatcaaaccta-ccaaaactcctgtaaccgcac 2077703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 290 - 383
Target Start/End: Complemental strand, 4654290 - 4654197
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaagg 383  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||||||||| |||||| || | ||| ||||||||| |||||| ||||||||    
T  4654290 gaagaagctaaaatgaaaattatttaaaacacaaagaatcctagcaagcacagggaatgctaagctagaagacttaaagagcaacatacaaagg 4654197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 465 - 593
Target Start/End: Original strand, 11814323 - 11814451
Alignment:
Q  465 gaaaccaataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgtt 564  Q
    |||||||||||||  ||||  |||||| || |||| |||| |||||||| |||||||||||| |||||||||||| ||| |||||||||| | |||||||    
T  11814323 gaaaccaataaaaattaaataccaaactaaaaagtgatctccaaaaacctaagtctaaacgcttgcgcaatagcagaaataaatcttgtgcctaactgtt 11814422  T
Q  565 gaaaaatctctacaaaataaccatcaaac 593  Q
    | |||| | || |||| ||||||||||||    
T  11814423 gcaaaacccctccaaagtaaccatcaaac 11814451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 290 - 382
Target Start/End: Complemental strand, 40581172 - 40581081
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaag 382  Q
    ||||||| |||||||||||||||||||||||||||||||  |||||||||||||||||| || | ||| |||||| ||||||||| |||||||    
T  40581172 gaagaagctaaaatgaaatttatttaaaacacaaagaatcttagcaagcacaaggaatgctaagctagaagactt-aaaagcaacatacaaag 40581081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 493 - 606
Target Start/End: Complemental strand, 14351611 - 14351498
Alignment:
Q  493 aagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaa 592  Q
    |||||||||||| ||||||| ||||||||||| |  ||||||||||| |||||||||||||| |||||  ||| |||| | || ||||||||||||||||    
T  14351611 aagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaaatcttgtgccaaaccattgcaaaacccctccaaaataaccatcaaa 14351512  T
Q  593 catattaaaaactc 606  Q
    | ||  ||||||||    
T  14351511 cctaccaaaaactc 14351498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 519 - 622
Target Start/End: Complemental strand, 26842343 - 26842240
Alignment:
Q  519 ctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcac 618  Q
    |||||| | |||||||||| | ||||||||||||||||| || ||||||||| |||| |||| |||||||||||| ||  |||||| |||||| |||||     
T  26842343 ctaaacacctgcgcaataggagaaacaaatcttgtgtcataccgttgaaaaacctctccaaactaaccatcaaacctaccaaaaacccatgtacccgcat 26842244  T
Q  619 ctta 622  Q
    ||||    
T  26842243 ctta 26842240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 291 - 336
Target Start/End: Original strand, 10494262 - 10494307
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaa 336  Q
    |||||| |||||||||||||||| |||||||||||||| |||||||    
T  10494262 aagaaggtaaaatgaaatttattcaaaacacaaagaattctagcaa 10494307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 104; Significance: 2e-51; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 291 - 617
Target Start/End: Original strand, 27888299 - 27888643
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    ||||| |||||||||||||||||||||||| ||||||| ||||||||||||| ||||| ||   ||||||| ||||| |||||| |||||||||||| ||    
T  27888299 aagaaattaaaatgaaatttatttaaaacataaagaatcctagcaagcacaacgaatgctaaactaggagaattaaagagcaacatacaaaggaaaagtg 27888398  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccatata-------------------aacaaaccaaaaacaccctcctatgcgggctctcgaaacca 471  Q
    |  ||| ||||||||||||| |||||||||||| ||| ||                   | ||||  |||||||||| ||  || |||| ||||||||||    
T  27888399 tc-cgtatatatgcggaacacccaaacaaacactcatgtatcaaatacaaacttccacaagcaaataaaaaacacccaccattgagggccctcgaaacca 27888497  T
Q  472 ataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaat 571  Q
    |||||| ||||||  ||||| |||||||||||| ||||||||||||||||||||  |||||||||| | ||||||||||||||||||||  || |||||     
T  27888498 ataaaaactaaacatcaaaccaagaagtcatctccaaaaaccaaagtctaaacgtctgcgcaatagtagaaacaaatcttgtgtcaaacctttaaaaaac 27888597  T
Q  572 ctctacaaaataaccatcaaacatattaaaaactcatgtaaccgca 617  Q
    |||| ||||||||||||| ||| ||  |||||||||||||||||||    
T  27888598 ctctccaaaataaccatcgaacctaccaaaaactcatgtaaccgca 27888643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 290 - 526
Target Start/End: Original strand, 6705140 - 6705381
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| |||||||||||||||||||||||| |||| | | |||||||| |||||||| |||| ||||||||||||||| |||| |||||||||||| |    
T  6705140 gaagaagctaaaatgaaatttatttaaaacactaaga-tcccagcaagcataaggaatgctaggctaggagacttaaaaaacaacatacaaaggaaaagt 6705238  T
Q  390 gtgtcgtgtatatgcggaacatcca--aacaaacaccca----tataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaa 483  Q
    ||||||| ||||||||||||| |||   ||||| ||  |    || ||||||||||||||||||||||  || |||| |||||||||||||||| |||||    
T  6705239 gtgtcgtatatatgcggaacacccatgtacaaatacaaacttctacaaacaaaccaaaaacaccctccactgagggccctcgaaaccaataaaaactaaa 6705338  T
Q  484 cgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgc 526  Q
    | |||||| |||||||||||  |||||||||||||||||||||    
T  6705339 caccaaaccaagaagtcatcaccaaaaaccaaagtctaaacgc 6705381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 291 - 622
Target Start/End: Original strand, 1532826 - 1533174
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| ||||||||||||||||| ||||||||||||| |||  ||| |||||||||  || ||||||||| ||||| |||||| |||||| ||||| ||    
T  1532826 aagaaggtaaaatgaaatttatttcaaacacaaagaatcctaataagtacaaggaatc-taagttaggagatttaaagagcaacatacaaacgaaaagtg 1532924  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccatata---------aac----------aaaccaaaaacaccctcctatgcgggctctcgaaacca 471  Q
    | |  | |||||||||||||||||||||| || |||| ||         |||          ||||||||||||||||||  |  |||| ||| ||||||    
T  1532925 tcta-tatatatgcggaacatccaaacaatcatccatgtatcaaatacaaacttctacaagtaaaccaaaaacaccctccactaagggccctcaaaacca 1533023  T
Q  472 ataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaat 571  Q
    |||||| |||||| |||||| |||||||||||| |||||||||||||| |||||  |||||||||||| |||||||||||||| |||||  || |||||     
T  1533024 ataaaagctaaacaccaaaccaagaagtcatctccaaaaaccaaagtccaaacgtttgcgcaatagcagaaacaaatcttgtgccaaaccattaaaaaac 1533123  T
Q  572 ctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    |||| ||||||||||||||||| ||  | |||| ||||||| |||||||||    
T  1533124 ctctccaaaataaccatcaaacttaccataaacccatgtaatcgcacctta 1533174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 290 - 622
Target Start/End: Original strand, 40899749 - 40900100
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    |||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||| |||  || || ||||||||| |||| |||||||||||| |    
T  40899749 gaagaagttaaaataaaatttatttaaaacacaaagaaccctagcaagcacaaggaatgctagactatgatacttaaaaaacaacatacaaaggaaaagt 40899848  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacaccca-------------------tataaacaaaccaaaaacaccctcctatgcgggctctcgaaacc 470  Q
    ||||||| ||||||| |||||  ||||||||| ||||                   || |||||||||||||||| |||||  || |||| ||||| |||    
T  40899849 gtgtcgtatatatgcagaacactcaaacaaacccccatgtatcaaatacaaacttctacaaacaaaccaaaaacatcctccactgagggccctcgagacc 40899948  T
Q  471 aataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaa 570  Q
    ||||||| ||||||  ||||| |||||| ||||| ||||||||||| ||||||||  |  ||| ||| | |||||||||||||| ||||| ||  |||||    
T  40899949 aataaaaactaaacatcaaaccaagaagccatctccaaaaaccaaattctaaacgtctatgcattagtagaaacaaatcttgtgccaaaccgtaaaaaaa 40900048  T
Q  571 tctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
     |||| ||||||| |||| |||| ||  |||||  |||||||||| ||||||    
T  40900049 cctctccaaaatatccatgaaacctaccaaaaatccatgtaaccgaacctta 40900100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 308 - 615
Target Start/End: Original strand, 9910115 - 9910442
Alignment:
Q  308 tttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgtcgtgtatatgcgga 407  Q
    |||||| |||||  |||||||  |||||||||||||||||| | || || |||||||||  || ||| |||||||||||| |||||||| ||||||||||    
T  9910115 tttattcaaaacgtaaagaatcgtagcaagcacaaggaatgtttggctatgagacttaagtaggaacatacaaaggaaaagtgtgtcgtatatatgcgga 9910214  T
Q  408 acatccaaacaaacaccc---------atataa----------acaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgcca 488  Q
    ||||||||||||||||||         ||||||          ||||||||||||||||||||  ||  ||| | | |||| ||||||| |||||| |||    
T  9910215 acatccaaacaaacacccatgattcaaatataaacttctacatacaaaccaaaaacaccctccactgaaggccccccaaactaataaaaactaaacacca 9910314  T
Q  489 -aacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataacca 587  Q
     ||| || ||||||||| ||||||||||||||||||||| || ||||||||| |||||| ||||||| ||||| |||| |||| |  |  |||||||| |    
T  9910315 taaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagcagaaacaagtcttgtgacaaaccgttgcaaaacccatcaaaaataacta 9910414  T
Q  588 tcaaacatattaaaaactcatgtaaccg 615  Q
    |||| | ||  |||||||| ||||||||    
T  9910415 tcaatcctaccaaaaactcgtgtaaccg 9910442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 465 - 618
Target Start/End: Complemental strand, 6186720 - 6186566
Alignment:
Q  465 gaaaccaataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgt 563  Q
    |||||||||||||  ||||| ||||| | |||||||||||| ||||||| ||||||||||| |  ||||||||||| |||||||||||||||||||| ||    
T  6186720 gaaaccaataaaaattaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcaaaaacaaatcttgtgtcaaaccgt 6186621  T
Q  564 tgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcac 618  Q
    || |||| | || ||||||||  ||||||| ||  |||||||| ||||| |||||    
T  6186620 tgcaaaaccccttcaaaataattatcaaacttaccaaaaactcgtgtaatcgcac 6186566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 430 - 618
Target Start/End: Complemental strand, 14951320 - 14951132
Alignment:
Q  430 aaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgcat 528  Q
    |||||||||||||||||||||   || || | || ||||||||||||| |||||| | ||| | ||||| |||||| |||| || ||||||||||| |      
T  14951320 aaacaaaccaaaaacaccctctactgaggcccct-gaaaccaataaaaactaaacacaaaaaccaagaaatcatctccaaacactaaagtctaaacaccc 14951222  T
Q  529 gcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcac 618  Q
    ||||||||||| |||||||||||||| ||||| |||| |||| | || ||||||||||||||||| ||  |||||||| ||||| |||||    
T  14951221 gcgcaatagcagaaacaaatcttgtgccaaaccgttgcaaaacccctccaaaataaccatcaaacctaccaaaaactcgtgtaatcgcac 14951132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 464 - 621
Target Start/End: Complemental strand, 38531808 - 38531651
Alignment:
Q  464 cgaaaccaataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactg 562  Q
    |||||||||||||| |||||| ||||| | || ||||||||| |||||||||| |||||||| | |||| | ||||| ||||||||||||||  ||||||    
T  38531808 cgaaaccaataaaaactaaacaccaaaaccaaaaagtcatctccaaaaaccaacgtctaaacacctgcgtagtagcagaaacaaatcttgtgctaaactg 38531709  T
Q  563 ttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctt 621  Q
    ||| |||| | || ||||| ||||||||||| ||  |||||| | ||||||||||||||    
T  38531708 ttgcaaaa-ccctccaaaagaaccatcaaacctaccaaaaacccgtgtaaccgcacctt 38531651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 290 - 428
Target Start/End: Complemental strand, 38532033 - 38531893
Alignment:
Q  290 gaagaagttaaaatgaaa-tttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaa-agcaacgtacaaaggaaaa 387  Q
    |||||||||||||||||| |||||| ||||| |||| ||| ||||| ||||||||||| | |||  |||||| ||||||  |||||| ||||||| ||||    
T  38532033 gaagaagttaaaatgaaaatttattcaaaacgcaaataatcctagcgagcacaaggaacgctagactaggagtcttaaagtagcaacatacaaagaaaaa 38531934  T
Q  388 atgtgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
     ||||| || ||||| |||||||||||||||||||| ||||    
T  38531933 gtgtgttgtatatatacggaacatccaaacaaacactcata 38531893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 290 - 428
Target Start/End: Complemental strand, 14951511 - 14951372
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaa-gcaacgtacaaaggaaaaa 388  Q
    |||||||||||||||||||||||| ||||| |||| ||| | ||| ||||||||||||| | |  ||| |  ||||||   ||||| ||||||||||||     
T  14951511 gaagaagttaaaatgaaatttattcaaaacgcaaacaatcccagcgagcacaaggaatgctggactagaaatcttaaagttgcaacatacaaaggaaaag 14951412  T
Q  389 tgtgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    |||||||| ||||||||||||| ||||||||||| |||||    
T  14951411 tgtgtcgtatatatgcggaacacccaaacaaacaaccata 14951372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 291 - 428
Target Start/End: Original strand, 33543927 - 33544060
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    ||||||||||||||||||||||| |||||| ||||||| ||| | ||||  || |||  || ||||||||||||||| | |||| |||||| ||||| ||    
T  33543927 aagaagttaaaatgaaatttattcaaaacagaaagaatcctaactagcatgagaaatactaagttaggagacttaaataacaacatacaaaagaaaagtg 33544026  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    |||||    || ||||||||  ||||||||||||||||    
T  33544027 tgtcg----tacgcggaacactcaaacaaacacccata 33544060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 41 - 180
Target Start/End: Original strand, 45413814 - 45413952
Alignment:
Q  41 aaaagattgggtgtataagttttgtgtgcgtgataaagtcattgattggaatattcgagtttcgattttatgttacaggttcttgctatttaaaatggag 140  Q
    |||||||||||||| | | ||||||||  ||||||||  ||||||||| ||| ||||||||| | |||| ||||||||| | ||||| | ||| ||||||    
T  45413814 aaaagattgggtgtgtgaattttgtgtatgtgataaatccattgattgcaattttcgagtttgggttttttgttacagg-tattgctctataacatggag 45413912  T
Q  141 gaggaagaagatgaaagaagatatctgtagtttttctttt 180  Q
    ||||||||||||  ||||||||| ||  || |||||||||    
T  45413913 gaggaagaagattgaagaagataacttaagcttttctttt 45413952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 291 - 428
Target Start/End: Complemental strand, 28165525 - 28165388
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| ||||||| |||||||| |||||  ||| |||  || | ||||||||||||| |||| || || ||||||| |||||| || ||||||||| ||    
T  28165525 aagaagataaaatggaatttattcaaaacgtaaataatcttatctagcacaaggaatgctaggctaagatacttaaatagcaacatataaaggaaaagtg 28165426  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    |||||| ||||  |||||||  ||||||||||| ||||    
T  28165425 tgtcgtatatacacggaacactcaaacaaacactcata 28165388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 291 - 422
Target Start/End: Complemental strand, 6186933 - 6186802
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaa-aagcaacgtacaaaggaaaaat 389  Q
    |||||| |||||||||||||||| ||||  |||||||| ||||| |||||||| |||| |||  |||||  ||||||  || ||| |||||| ||||| |    
T  6186933 aagaagctaaaatgaaatttattcaaaatgcaaagaatcctagcgagcacaagcaatgctagactaggaatcttaaagtagaaacatacaaatgaaaagt 6186834  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaaca 422  Q
    ||||  | |||||||||| || |||||||||||    
T  6186833 gtgt-atatatatgcggagcacccaaacaaaca 6186802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 430 - 490
Target Start/End: Original strand, 33544081 - 33544141
Alignment:
Q  430 aaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgccaaa 490  Q
    ||||||||||||||||||||||  || |||| | | |||||||||||| |||||| |||||    
T  33544081 aaacaaaccaaaaacaccctccactgagggcccccaaaaccaataaaaactaaacaccaaa 33544141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 184 - 212
Target Start/End: Original strand, 45414120 - 45414148
Alignment:
Q  184 ataattcacttaaaggttaattgtgtaat 212  Q
    |||||||||||||||||||||||||||||    
T  45414120 ataattcacttaaaggttaattgtgtaat 45414148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 103; Significance: 6e-51; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 294 - 622
Target Start/End: Complemental strand, 21591152 - 21590807
Alignment:
Q  294 aagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgt 393  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||||||||||  ||| |||||  ||||| |||||    
T  21591152 aagttaaaatgaaatttatttaaaacacaaagaattctagcaagcacaaggaatgctaagttaggagacttaaaaa--aacatacaagagaaaagtgtgt 21591055  T
Q  394 cgtgtatatgcggaacatccaaacaaacaccca-------------------tataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaata 474  Q
    ||| ||||||| ||||| ||||||||||  |||                   || ||||||||||||||||||||||   |   || |||||||||||||    
T  21591054 cgtatatatgcagaacacccaaacaaacctccatgtatcaaatacaaacttttacaaacaaaccaaaaacaccctccaccgaaagccctcgaaaccaata 21590955  T
Q  475 aaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctc 574  Q
    |||  ||||| |||||  |||||||||||| |||||| |||| ||||||||  || ||||||||| |||||||||||||| ||||| || ||||||||||    
T  21590954 aaaattaaacaccaaatcaagaagtcatctccaaaaaacaaattctaaacgtttgtgcaatagcagaaacaaatcttgtgccaaaccgtagaaaaatctc 21590855  T
Q  575 tacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    | ||||||||||| ||||| ||  |||||  ||| |||||||||||||    
T  21590854 tccaaaataaccaacaaacctaccaaaaatccatctaaccgcacctta 21590807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 290 - 593
Target Start/End: Complemental strand, 43048320 - 43047997
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||||||||||||| |||||| |||| | ||||||| ||| ||| ||||||||||| | |||||||||||||||  || ||| ||||||||||||||    
T  43048320 gaagaagttaaaatgaagtttattcaaaatataaagaatcctaacaaacacaaggaatgcttggttaggagacttaagtaggaacatacaaaggaaaaat 43048221  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacccat-------------------ataaacaaaccaaaaacaccctcctatgcgggctctcgaaacc 470  Q
    ||||||| ||||||  |||||  ||||||||||  |||                   | |||||||||||||||||||||   || |||| | |||||||    
T  43048220 gtgtcgtatatatgtagaacactcaaacaaacaatcatgcatcaaatacaaacttctacaaacaaaccaaaaacaccctctactgagggcccccgaaacc 43048121  T
Q  471 aataaaacctaaacgcca-aacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaa 569  Q
    ||||||| |||||| | | |||||| ||||||||| |||||||||||||||||| ||| | ||||||||||||||||||||||||| |||| |||| |||    
T  43048120 aataaaaactaaacactagaacaaaaaagtcatctccaaaaaccaaagtctaaatgcacgagcaatagcataaacaaatcttgtgtaaaaccgttgcaaa 43048021  T
Q  570 atctctacaaaataaccatcaaac 593  Q
    |||  | |||||||||||||||||    
T  43048020 atccatccaaaataaccatcaaac 43047997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 291 - 622
Target Start/End: Original strand, 32978745 - 32979092
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    ||||||||||||||||||||| ||||||||||  |||| |||||||||| |||||||  || | || |||||||||| || ||| || ||| ||||| ||    
T  32978745 aagaagttaaaatgaaatttaattaaaacaca--gaatcctagcaagcataaggaatattaagctatgagacttaaagagtaacatataaaagaaaagtg 32978842  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccatata-----aacaaacc--------------aaaaacaccctcctatgcgggctctcgaaacca 471  Q
    | | || |||||||||| ||||||||||||||| ||| ||     |||||||               |||||||||||||  || | || || |||| ||    
T  32978843 tct-gtttatatgcggatcatccaaacaaacactcatgtatcaaaaacaaacttctacaagcaaataaaaaacaccctccactgagcgcccttgaaatca 32978941  T
Q  472 ataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaat 571  Q
    |||||| |||||| | |||| |||||||||||| |||||||||||||| |||||| ||||||||  ||||||||||||||||| ||||||||| |||||     
T  32978942 ataaaaactaaacactaaaccaagaagtcatctccaaaaaccaaagtccaaacgcctgcgcaatgacataaacaaatcttgtgccaaactgttaaaaaac 32979041  T
Q  572 ctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    |||| |||||||||||||||||  |  |||||| |||||||||||||||||    
T  32979042 ctctccaaaataaccatcaaacccaccaaaaacccatgtaaccgcacctta 32979092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 298 - 591
Target Start/End: Original strand, 24717545 - 24717848
Alignment:
Q  298 taaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgtcgtg 397  Q
    ||||||||| |||||| ||||| ||||||||  |||||||||||||||||| |  | || |||||||||  || ||  ||||||| |||| ||||  ||     
T  24717545 taaaatgaagtttattcaaaacgcaaagaatcttagcaagcacaaggaatgcttagctatgagacttaagtaggaagatacaaagaaaaagtgtgatgta 24717644  T
Q  398 tatatgcggaacatccaaacaaacacccat---------ataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgcca 488  Q
    ||||||||||||| |||||||||||  |||         | |||||||||||||||||||||   || |||| | | |||||||||||| |||||| |||    
T  24717645 tatatgcggaacacccaaacaaacattcatgcatcaaatacaaacaaaccaaaaacaccctctactgagggcccaccaaaccaataaaaactaaacacca 24717744  T
Q  489 -aacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataacca 587  Q
     ||| || ||||||||| ||||||||||||||||||||| || ||||||| | |||||| ||||||| ||||| |||| |||| |  | |||||||||||    
T  24717745 taaccaaaaagtcatctccaaaaaccaaagtctaaacgcctgagcaatagtagaaacaagtcttgtgccaaacagttgcaaaacccatccaaaataacca 24717844  T
Q  588 tcaa 591  Q
    ||||    
T  24717845 tcaa 24717848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 290 - 428
Target Start/End: Original strand, 31038619 - 31038757
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| ||||||||||||||||||||||  |||||||  || | ||||||||||||| |||| || || ||||||| |||||| |||||||||||| |    
T  31038619 gaagaagctaaaatgaaatttatttaaaacgtaaagaatcttatctagcacaaggaatgctaggctaagatacttaaatagcaacatacaaaggaaaagt 31038718  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    ||||||| ||||  |||||||  ||||||||||| ||||    
T  31038719 gtgtcgtatatacacggaacactcaaacaaacactcata 31038757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 290 - 372
Target Start/End: Original strand, 10365417 - 10365499
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagca 372  Q
    ||||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| || | ||| ||||||||| ||||    
T  10365417 gaagaagctaaaatgaaatttatttaaaacacaaagaatcctagcaagcacaaagaatgctaagctagaagacttaaagagca 10365499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 291 - 427
Target Start/End: Complemental strand, 34294025 - 34293892
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| ||||||||||||||||||||||||  ||||| |||||||||||||  |||| || | ||| ||||| ||| |||| | |||||||||||| ||    
T  34294025 aagaagctaaaatgaaatttatttaaaacac--agaatcctagcaagcacaaaaaatgttaagctagaagactgaaagagcaccatacaaaggaaaagtg 34293928  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccat 427  Q
    |  ||| ||||||||||| |  |||||||||||||||    
T  34293927 t-ccgtatatatgcggaatactcaaacaaacacccat 34293892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 296 - 367
Target Start/End: Complemental strand, 21321601 - 21321530
Alignment:
Q  296 gttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaa 367  Q
    |||||||||||||||||| ||||||||| |||| ||| | |||||||||| |||||||||| ||| ||||||    
T  21321601 gttaaaatgaaatttattaaaaacacaatgaatcctacctagcacaaggagtgataggttaagagtcttaaa 21321530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 531 - 621
Target Start/End: Original strand, 26711907 - 26711998
Alignment:
Q  531 gcaatagcataaacaaatctt-gtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctt 621  Q
    ||||||||  ||||||||||| ||| ||||| ||||||||||| ||  |||||||||||||||| ||  |||||| ||||||||||||||||    
T  26711907 gcaatagcggaaacaaatcttagtgccaaaccgttgaaaaatccctctaaaataaccatcaaacctaccaaaaacccatgtaaccgcacctt 26711998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 25970068 - 25970010
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatg 348  Q
    |||||||||||||||||||||||| ||| |||||  ||| ||| | |||||||||||||    
T  25970068 gaagaagttaaaatgaaatttattaaaatcacaattaatcctaaccagcacaaggaatg 25970010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 430 - 526
Target Start/End: Original strand, 7437148 - 7437245
Alignment:
Q  430 aaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaacctaaacgcc-aaacaaagaagtcatcttcaaaaaccaaagtctaaacgc 526  Q
    |||||||| || ||||||||||  || |||  |||||||||||||||| |||||| || |||| |  ||||||||||  ||||||||||| |||||||    
T  7437148 aaacaaactaacaacaccctccattgagggtactcgaaaccaataaaaactaaacaccaaaaccacaaagtcatctttcaaaaccaaagtataaacgc 7437245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 350 - 410
Target Start/End: Original strand, 7437048 - 7437108
Alignment:
Q  350 taggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgtcgtgtatatgcggaaca 410  Q
    |||| ||||||||||||| |||||| ||||||| |||| |||  ||| |||||||||||||    
T  7437048 taggctaggagacttaaatagcaacatacaaagaaaaagtgtaccgtatatatgcggaaca 7437108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 291 - 347
Target Start/End: Original strand, 47718826 - 47718882
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaat 347  Q
    |||||| |||||||||||||||| ||| ||||| |||| ||| | ||||||||||||    
T  47718826 aagaagctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggaat 47718882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 6e-45; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 291 - 526
Target Start/End: Original strand, 14440735 - 14440979
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| |||||||||||||||||||||||| |||||| ||| |||||||||| |||| |||  ||||||||||||||| |||  ||| |||||||| |     
T  14440735 aagaagctaaaatgaaatttatttaaaacactaagaatcctaacaagcacaagaaatgttagactaggagacttaaaaaacaatatactaaggaaaagtt 14440834  T
Q  391 tgtcgtgtatatgcggaacatccaaacaa---------acacccatataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaataaaaccta 481  Q
    |||||| ||||||||||||| ||||||||         | ||   || ||||||||||||||||||||||   | |||| |||||||||||||||| |||    
T  14440835 tgtcgtatatatgcggaacacccaaacaaaataaatacaaacttctacaaacaaaccaaaaacaccctccatggagggccctcgaaaccaataaaaacta 14440934  T
Q  482 aacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgc 526  Q
    ||| |||||| |||||||||||||||||||||||||||| |||||    
T  14440935 aacaccaaaccaagaagtcatcttcaaaaaccaaagtctgaacgc 14440979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 291 - 622
Target Start/End: Complemental strand, 42678218 - 42677871
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||||||||||| ||||| ||||||||| |  |||| ||||||||||| || |||| |||| |||||||||||||||| ||| || ||||||||| ||    
T  42678218 aagaagttaaaatggaatttgtttaaaacaga--gaatcctagcaagcacgagaaatgctaggctaggagacttaaaaagtaacataaaaaggaaaagtg 42678121  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacc------------ca------tataaacaaaccaaaaacaccctcctatgcgggctctcgaaaccaa 472  Q
    | |||| |||||| |||||| ||||||||||| |            ||      || ||||||||||||||||| | ||  ||  | | |||||| ||||    
T  42678120 tctcgtatatatgtggaacacccaaacaaacatcatgcatcaaatacaaacttctacaaacaaaccaaaaacacacaccactgatgaccctcgaagccaa 42678021  T
Q  473 taaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatc 572  Q
    |||||  |||||  ||||| ||||||||||||   ||||||||||||||||||| ||| ||||| |||||| |||||||||  ||||||||||||||| |    
T  42678020 taaaaattaaacatcaaaccaagaagtcatctctcaaaaccaaagtctaaacgcctgcacaataacataaaaaaatcttgtaccaaactgttgaaaaacc 42677921  T
Q  573 tctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    ||| |||||||||||| |||| ||  | ||||||||||||||||||||||    
T  42677920 tcttcaaaataaccatgaaacctaccacaaactcatgtaaccgcacctta 42677871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 290 - 524
Target Start/End: Original strand, 12130140 - 12130392
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| ||||||||||| |||||||||||| |||||| |||||| ||| |||||||| |||| |||||||||||||||||| | |||| | ||||| |    
T  12130140 gaagaagctaaaatgaaatctatttaaaacactaagaatcctagcatgcagaaggaatgctaggctaggagacttaaaaagcatcatacagaagaaaagt 12130239  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacaccca------------------tataaacaaaccaaaaacaccctcctatgcgggctctcgaaacca 471  Q
    |||  || ||||||||||||| |||||||||||||||                  || ||||||||||||||||| ||||  || | || ||||||||||    
T  12130240 gtgatgtatatatgcggaacacccaaacaaacacccatgtacaaatagaaacttttacaaacaaaccaaaaacactctccactgagagccctcgaaacca 12130339  T
Q  472 ataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaac 524  Q
    |||||| |||||| |||||| || ||||||||| |||||||||||||||||||    
T  12130340 ataaaaactaaacaccaaaccaataagtcatctccaaaaaccaaagtctaaac 12130392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 462 - 622
Target Start/End: Original strand, 45872837 - 45872997
Alignment:
Q  462 ctcgaaaccaataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaact 561  Q
    |||||||||||||||| ||| || ||||||  | ||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||   ||||     
T  45872837 ctcgaaaccaataaaaactagacaccaaacccataagtcatctccaaaaaccaaagtctaaacgcatgcgcaatagcagaaacaaatcttgtacgaaacc 45872936  T
Q  562 gttgaaaaatctctacaaaataaccatcaaacatattaaaaactcatgtaaccgcacctta 622  Q
    |||| ||||  ||| ||||||||||| ||||| ||  |||||| || ||||||||||||||    
T  45872937 gttgcaaaacgtctccaaaataaccaccaaacctaccaaaaacccacgtaaccgcacctta 45872997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 294 - 423
Target Start/End: Original strand, 45872652 - 45872781
Alignment:
Q  294 aagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgt 393  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||||||||||||  |||| || |||||||||||| |||| ||||||| |||| |||      
T  45872652 aagttaaaatgaaatttatttaaaacacatataatcctagcaagcacaaggaatactaggctatgagacttaaaaaacaacatacaaagaaaaagtgttc 45872751  T
Q  394 cgtgtatatgcggaacatccaaacaaacac 423  Q
    ||| ||||||||||||| ||||||||||||    
T  45872752 cgtatatatgcggaacacccaaacaaacac 45872781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 291 - 427
Target Start/End: Complemental strand, 56092924 - 56092788
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatg 390  Q
    |||||| ||||||||||||||||||| |  |||||||| ||||||||||||||||||| |||| ||||||| ||||||| |||  |||| ||||||| ||    
T  56092924 aagaagctaaaatgaaatttatttaacatgcaaagaatcctagcaagcacaaggaatgctaggctaggagaattaaaaaacaatatacacaggaaaagtg 56092825  T
Q  391 tgtcgtgtatatgcggaacatccaaacaaacacccat 427  Q
    |||||| |||||||||||||  |||||||||| ||||    
T  56092824 tgtcgtatatatgcggaacacacaaacaaacatccat 56092788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 293 - 428
Target Start/End: Original strand, 52635137 - 52635273
Alignment:
Q  293 gaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaa-agcaacgtacaaaggaaaaatgt 391  Q
    ||||||||||||||||||||| ||||| |||||||  ||||| |||| |||||||| |||  ||| |  ||||||  |  ||| ||||||| |||| |||    
T  52635137 gaagttaaaatgaaatttattcaaaacgcaaagaaccctagcgagcataaggaatgctagactagaaatcttaaagtaataacatacaaagaaaaagtgt 52635236  T
Q  392 gtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  52635237 gtcgtgtatatgcggaacacccaaacaaacaaccata 52635273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 298 - 422
Target Start/End: Original strand, 55728146 - 55728271
Alignment:
Q  298 taaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaa-aagcaacgtacaaaggaaaaatgtgtcgt 396  Q
    |||||||||||||||| ||||| |||||||| ||||| || || ||||||| ||| ||||||   |||||  |||||| |||||||||||  ||| ||||    
T  55728146 taaaatgaaatttattcaaaacgcaaagaatcctagcgaggacgaggaatgctagattaggaatattaaagtagcaacatacaaaggaaaggtgtatcgt 55728245  T
Q  397 gtatatgcggaacatccaaacaaaca 422  Q
    |||||||||||||  |||||||||||    
T  55728246 gtatatgcggaacgcccaaacaaaca 55728271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 470 - 612
Target Start/End: Original strand, 52635364 - 52635506
Alignment:
Q  470 caataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaa 568  Q
    |||||||| |||||| ||||| | |||||||||| | ||||||| |||||||||||    || |||||||| |||||||||||||| ||||  |||| ||    
T  52635364 caataaaaactaaacaccaaaactaagaagtcatttccaaaaactaaagtctaaacatccgctcaatagcagaaacaaatcttgtgccaaatcgttgcaa 52635463  T
Q  569 aatctctacaaaataaccatcaaacatattaaaaactcatgtaa 612  Q
    |||| || ||||||||||||||||| ||  |||||||| |||||    
T  52635464 aatc-ctccaaaataaccatcaaacctaccaaaaactcgtgtaa 52635506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 465 - 546
Target Start/End: Original strand, 55728364 - 55728446
Alignment:
Q  465 gaaaccaataaaacctaaacgccaaa-caaagaagtcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaa 546  Q
    ||||||||||||| |||||| ||||| | |||||||||||| ||||||| ||||||||||| |  ||||||||||| ||||||    
T  55728364 gaaaccaataaaaactaaacaccaaaaccaagaagtcatctccaaaaactaaagtctaaacacccgcgcaatagcagaaacaa 55728446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 290 - 428
Target Start/End: Complemental strand, 19676275 - 19676137
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||||||||||| |||| ||| |||||  ||||||| ||| | ||||||||||||| |||| ||  | ||||||| |||||| ||||||  |||| |    
T  19676275 gaagaagttaaaatggaattgattcaaaacgtaaagaatcctatctagcacaaggaatgttaggctaaaatacttaaatagcaacatacaaaaaaaaagt 19676176  T
Q  390 gtgtcgtgtatatgcggaacatccaaacaaacacccata 428  Q
    ||| ||  ||||  |||||||  ||||||||||| ||||    
T  19676175 gtgccgaatatacacggaacactcaaacaaacactcata 19676137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 290 - 367
Target Start/End: Complemental strand, 19676980 - 19676903
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaa 367  Q
    ||||||||||||||| |||||||| |||||  ||||||| ||| | ||||||||||||| |||| || || |||||||    
T  19676980 gaagaagttaaaatggaatttattcaaaacgtaaagaatcctatctagcacaaggaatgttaggctaagatacttaaa 19676903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 355 - 430
Target Start/End: Original strand, 44496494 - 44496567
Alignment:
Q  355 taggagacttaaaaagcaacgtacaaaggaaaaatgtgtcgtgtatatgcggaacatccaaacaaacacccatata 430  Q
    ||||||||||||| |||||| ||||||| |||| ||||||  ||||| ||||||||  |||||| |||||||||||    
T  44496494 taggagacttaaatagcaacatacaaagaaaaagtgtgtc--gtatacgcggaacactcaaacagacacccatata 44496567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 290 - 348
Target Start/End: Complemental strand, 52721918 - 52721860
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatg 348  Q
    ||||||| |||||||||||||||| ||| ||||| |||| ||| | |||||||||||||    
T  52721918 gaagaagctaaaatgaaatttattaaaatcacaatgaatcctaaccagcacaaggaatg 52721860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083 (Bit Score: 76; Significance: 8e-35; HSPs: 2)
Name: scaffold0083
Description:

Target: scaffold0083; HSP #1
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 298 - 425
Target Start/End: Original strand, 2672 - 2799
Alignment:
Q  298 taaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaatgtgtcgtg 397  Q
    |||||||||| ||||| ||||| |||||||| ||||||||||||||||||| |||  |||||||||||| ||||||| |||||||||||| |||| |||     
T  2672 taaaatgaaacttattcaaaacgcaaagaatcctagcaagcacaaggaatgctagactaggagacttaacaagcaacatacaaaggaaaagtgtgccgta 2771  T
Q  398 tatatgcggaacatccaaacaaacaccc 425  Q
    ||||||||||||||||||||||| ||||    
T  2772 tatatgcggaacatccaaacaaagaccc 2799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0083; HSP #2
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 462 - 569
Target Start/End: Original strand, 2858 - 2967
Alignment:
Q  462 ctcgaaaccaataaaacctaaacgccaaacaaagaagtcatcttcaaaaaccaaagtctaaac--gcatgcgcaatagcataaacaaatcttgtgtcaaa 559  Q
    |||||||| |||||||  ||||| ||| || || || |||||| |||||||||||||||||||  ||  | ||||||||| |||||||||||||| ||||    
T  2858 ctcgaaactaataaaaattaaacaccataccaaaaattcatctccaaaaaccaaagtctaaacacgcccgtgcaatagcagaaacaaatcttgtgccaaa 2957  T
Q  560 ctgttgaaaa 569  Q
    ||||||||||    
T  2958 ctgttgaaaa 2967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974 (Bit Score: 57; Significance: 2e-23; HSPs: 2)
Name: scaffold0974
Description:

Target: scaffold0974; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 290 - 418
Target Start/End: Complemental strand, 3031 - 2903
Alignment:
Q  290 gaagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaaagcaacgtacaaaggaaaaat 389  Q
    ||||||| ||||||||  ||||||||||| ||||||||| ||||||||||||||||||| | || ||||||||||||  || ||| || ||| ||||| |    
T  3031 gaagaagataaaatgaggtttatttaaaagacaaagaatcctagcaagcacaaggaatgtttggctaggagacttaagtaggaacatataaaagaaaagt 2932  T
Q  390 gtgtcgtgtatatgcggaacatccaaaca 418  Q
    ||||||| |||||| |||||| |||||||    
T  2931 gtgtcgtatatatgtggaacacccaaaca 2903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0974; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 499 - 618
Target Start/End: Complemental strand, 2806 - 2687
Alignment:
Q  499 tcatcttcaaaaaccaaagtctaaacgcatgcgcaatagcataaacaaatcttgtgtcaaactgttgaaaaatctctacaaaataaccatcaaacatatt 598  Q
    |||||| ||||| ||||||||||||||| || ||||||||| |||||| ||||||| ||||| |||| |||  |  |  ||||||| |||||| | ||      
T  2806 tcatctccaaaacccaaagtctaaacgcctgagcaatagcagaaacaagtcttgtgccaaaccgttgcaaatcccatctaaaataatcatcaatcctacc 2707  T
Q  599 aaaaactcatgtaaccgcac 618  Q
    ||||||||||||||||||||    
T  2706 aaaaactcatgtaaccgcac 2687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 291 - 368
Target Start/End: Original strand, 269590 - 269667
Alignment:
Q  291 aagaagttaaaatgaaatttatttaaaacacaaagaatactagcaagcacaaggaatgataggttaggagacttaaaa 368  Q
    ||||||||||||||||||||||||||||| || |||||  ||||||||| ||| |||| || | ||| ||||||||||    
T  269590 aagaagttaaaatgaaatttatttaaaactcagagaattttagcaagcataagaaatgctaagctagaagacttaaaa 269667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University