View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_low_4 (Length: 597)
Name: NF9200_low_4
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 585
Target Start/End: Complemental strand, 44926349 - 44925765
Alignment:
| Q |
1 |
gtcttcttattatcattgtcgctactttcacccttctggaacacgctcaatacatggcacaaactgcatatgtccagtattagtaaccnnnnnnnctttt |
100 |
Q |
| |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
44926349 |
gtcttcttattatcattatcgctactttcacccttctggaacacgctcaatacatggcacaaactgcatatgtccagtattagtaaccaaaaaaactttt |
44926250 |
T |
|
| Q |
101 |
ctttaattaattgcacaaacaaccattgccaagactttacctctcggctgatataactagttttccgttttggtactctggatttttgttatccatcaat |
200 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44926249 |
ctttaattaattacacaaacaaccattgccaagactttacctctcggctgatataactagttttccgtttcggtactctggatttttgttatccatcaat |
44926150 |
T |
|
| Q |
201 |
tgataaaaaactgcagatgcggcaatctctttgatgtgattacttagtagcatagtgtcagaatgaccgatagtattcaagtcatcacaaccaatgtcat |
300 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
44926149 |
tgataaaacactgcagatgcggcaatctctttgatgtgattacttagtagcatagtgtcagaatgaccgatagtattcaagtcatcacaaccaatgttat |
44926050 |
T |
|
| Q |
301 |
tctctgcaagcacttgagaaatgtgtttcaactgagtctttgtcatggcctcttctagttggactttccaaattttgagacgagactcatcttgaggcgg |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44926049 |
tctctgcaagcacttgagaaatgtgtttcaactgagtctttgtcatggcctcttctagttggactttccaaattttgagacgagactcatcttgaggcgg |
44925950 |
T |
|
| Q |
401 |
tttgatctcaatgttgcaagggaataacatagtgagtttttcatcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaact |
500 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44925949 |
tttgatctcaatgttgcaagggaataacatagtgagtttttcatcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaact |
44925850 |
T |
|
| Q |
501 |
gaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaggtcattctcaacattcttgatgt |
585 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
44925849 |
gaccctgaaagtttatttaatagctcatggaacaaattgtacatcctaggatattgtcgaaagtcattctcaacattcttgatgt |
44925765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 326 - 547
Target Start/End: Complemental strand, 44934181 - 44933960
Alignment:
| Q |
326 |
tttcaactgagtctttgtcatggcctcttctagttggactttccaaattttgagacgagactcatcttgaggcggtttgatctcaatgttgcaagggaat |
425 |
Q |
| |
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|||||| ||||||||| ||||||||| || ||||||| |||||| ||||||||| ||| |||||||||||| ||| ||||||| |||||| |||||||| |
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| T |
44934181 |
tttcaagtgagtctttttcatggccttttttagttggcttttccagattttgagatgagtctcatcttgaggtggtgtgatctctatgttgtaagggaat |
44934082 |
T |
|
| Q |
426 |
aacatagtgagtttttcatcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaactgaccctgaaagtttatttaatagct |
525 |
Q |
| |
|
||||||||||||||||||| |||| ||| |||| || |||||||| ||||||||| |||||||| ||||| |||||||||||||||||| || |
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| T |
44934081 |
aacatagtgagtttttcattgactttggtacagttatattttaaatcataaggccgggaaccgagtatcaacactgatcctgaaagtttatttaatgtct |
44933982 |
T |
|
| Q |
526 |
catggaacaaattgtacatcct |
547 |
Q |
| |
|
|||||||| |||||||||| |
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| T |
44933981 |
tttggaacaatctgtacatcct |
44933960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 44934526 - 44934451
Alignment:
| Q |
1 |
gtcttcttattatcattgtcgctactttcacccttctggaacacgctcaatacatggcacaaactgcatatgtcca |
76 |
Q |
| |
|
|||||||| ||||| || |||||||||||||||| |||||||| |||| |||||||| ||||||||||||||||| |
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|
| T |
44934526 |
gtcttcttgttatccttctcgctactttcaccctcctggaacagactcagtacatggcgcaaactgcatatgtcca |
44934451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 343 - 523
Target Start/End: Complemental strand, 32199565 - 32199384
Alignment:
| Q |
343 |
tcatggcctcttctagttggactttccaaattttgagacgagactc-atcttgaggcggtttgatctcaatgttgcaagggaataacatagtgagttttt |
441 |
Q |
| |
|
|||| ||||||| || |||| ||||||| ||||||||||||| | |||| |||| |||||||||||| |||||||||||||||||| | || |||| |
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| T |
32199565 |
tcatagcctcttataattgggctttccagattttgagacgagtttttatctgaaggcagtttgatctcaacgttgcaagggaataacatggcaagctttt |
32199466 |
T |
|
| Q |
442 |
catcaacttctacacatttatcttcggaatcataaatccgggaaccaagtatcaaaactgaccctgaaagtttatttaatag |
523 |
Q |
| |
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||||||||| | ||| |||||||| ||||||||||| ||||||| || ||||| ||||| ||||||||||| |||||||| |
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| T |
32199465 |
catcaacttttttacaattatcttctaaatcataaatctgggaaccgaggatcaacactgatcctgaaagtttctttaatag |
32199384 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 117 - 315
Target Start/End: Complemental strand, 32197329 - 32197130
Alignment:
| Q |
117 |
aaacaaccattgccaagac-tttacctctcggctgatataactagttttccgttttggtactctggatttttgttatccatcaattgataa-aaaactgc |
214 |
Q |
| |
|
|||||||||||| | |||| ||||||||| | |||||||||| |||| | |||||||||||||||| ||| |||||||||||||||||| |||||||| |
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|
| T |
32197329 |
aaacaaccattgtcgagacctttacctctttggcgatataactaatttttcattttggtactctggatattttttatccatcaattgataaaaaaactgc |
32197230 |
T |
|
| Q |
215 |
agatgcggcaatctctttgatgtgattacttagtagcatagtgtcagaatgaccgatagtattcaagtcatcacaaccaatgtcattctctgcaagcact |
314 |
Q |
| |
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|||||| ||||| |||| |||||||| | | ||| ||||| ||||| || | ||| | |||||||||| ||||| |||||||||| |||||||||| |
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| T |
32197229 |
agatgccgcaatttcttcgatgtgatcattgagttgcataatgtcattatagctgattgaattcaagtcaacacaa-caatgtcatttgttgcaagcact |
32197131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 348 - 429
Target Start/End: Complemental strand, 32197086 - 32197004
Alignment:
| Q |
348 |
gcctcttctagttggactttccaaattttgagacgagactca-tcttgaggcggtttgatctcaatgttgcaagggaataaca |
429 |
Q |
| |
|
|||||||||| |||| ||||||| ||||||||||||| | | |||| |||| |||||||||||| ||||||||||||||||| |
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|
| T |
32197086 |
gcctcttctaattgggctttccagattttgagacgagttttaatcttaaggcagtttgatctcaacgttgcaagggaataaca |
32197004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 37 - 76
Target Start/End: Complemental strand, 32197411 - 32197372
Alignment:
| Q |
37 |
tggaacacgctcaatacatggcacaaactgcatatgtcca |
76 |
Q |
| |
|
|||||||||||||||||||| ||||||||||| ||||||| |
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|
| T |
32197411 |
tggaacacgctcaatacatgacacaaactgcacatgtcca |
32197372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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