View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9200_low_7 (Length: 514)
Name: NF9200_low_7
Description: NF9200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9200_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 376; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 20 - 403
Target Start/End: Complemental strand, 2310071 - 2309688
Alignment:
| Q |
20 |
ccagatatataaggtaaaaacactaccacaacctcccaatttaatccatccaaatgtgacatattagattcagggctcattttctttctttctctttgca |
119 |
Q |
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| T |
2310071 |
ccagatatataaggtaaaaaaactaccacaacctcccaatttaatccatccaaatgtgacatattagattcagggctcattttctttctttctctttgca |
2309972 |
T |
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| Q |
120 |
atgcatcaattatattattgagaatctttgtaggccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaa |
219 |
Q |
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| T |
2309971 |
atgcatcaattatattattgagaatctttgtatgccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattcttcaaa |
2309872 |
T |
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| Q |
220 |
gccctgcgtttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttcagaagagtaaaatctcttaggtcct |
319 |
Q |
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| T |
2309871 |
gccctgcgtttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttcagaagagtaaaatctcttaggtcct |
2309772 |
T |
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| Q |
320 |
ccgatgataaatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaatcag |
403 |
Q |
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| T |
2309771 |
ccgatgataaatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaatcag |
2309688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 21 - 400
Target Start/End: Original strand, 2928968 - 2929356
Alignment:
| Q |
21 |
cagatatataaggtaaaaacactaccacaacctcccaatttaatccatccaaatgtgacatatta------gattcagggctcattttctttctttctct |
114 |
Q |
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| T |
2928968 |
cagacatattagttaaaaaaactaccaaaacctcccaatttaatccatccaaatgtgaaatggtacactcagattcatggctcattttgtttctctctct |
2929067 |
T |
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| Q |
115 |
ttgcaatgcatcaattatattattgagaatctttgtaggccttacactttcttgataggtttgaggcattgtacgtccttcaaacctttgtttgtattct |
214 |
Q |
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| T |
2929068 |
cagcaatgcatcaataatattattgagaatctttgtaagccttacactttcttgatgggttggaggcattgtacgtccttcaaacctttgtttgtattct |
2929167 |
T |
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| Q |
215 |
tcaaagccctgcgtttcattcctctcaaaagttgttggtagagaaataaaacgggttcgtttcgtgtaaggaacagtttca---gaagagtaaaatctct |
311 |
Q |
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| T |
2929168 |
tcaaagccctttgttacattcctctcaaaagttgttgctagacaaataaaacgggttcgtttcgtgtaaggaacagtttcaaataaagagtaaaatctct |
2929267 |
T |
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| Q |
312 |
taggtcctccgatgataaatggattgtgaaatttgttgttgatttcaacactttttgttgtgcctaatctgtaggaaaatgctatgaat |
400 |
Q |
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| T |
2929268 |
tgggtcctccaatgacaaatggattgtgaaatttgttgttgatttcaacatttcttgttgtgcctgatctgttagaaaatgctatgaat |
2929356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 459 - 502
Target Start/End: Complemental strand, 2309641 - 2309598
Alignment:
| Q |
459 |
ttagcttcttcaatggtcagattctgttaatcaatgatgtccat |
502 |
Q |
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| T |
2309641 |
ttagcttcttcaatgttcagattctgttaatcaatgttgtccat |
2309598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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