View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9201_high_1 (Length: 628)

Name: NF9201_high_1
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9201_high_1
NF9201_high_1
[»] chr2 (4 HSPs)
chr2 (326-611)||(35926365-35926651)
chr2 (233-302)||(18962106-18962175)
chr2 (208-248)||(36534696-36534736)
chr2 (233-269)||(42826319-42826355)
[»] chr7 (5 HSPs)
chr7 (76-308)||(25670648-25670871)
chr7 (3-57)||(25670922-25670976)
chr7 (146-192)||(25670847-25670893)
chr7 (200-251)||(21568757-21568808)
chr7 (3-55)||(47501682-47501734)
[»] chr4 (6 HSPs)
chr4 (1-58)||(5625132-5625189)
chr4 (238-298)||(437504-437565)
chr4 (195-255)||(2987084-2987144)
chr4 (207-256)||(46796926-46796974)
chr4 (213-269)||(6364062-6364117)
chr4 (196-228)||(28615215-28615247)
[»] chr8 (8 HSPs)
chr8 (3-55)||(39726388-39726440)
chr8 (196-255)||(2833445-2833504)
chr8 (196-255)||(2840255-2840314)
chr8 (196-255)||(2844942-2845001)
chr8 (246-302)||(42237490-42237547)
chr8 (9-57)||(31606189-31606237)
chr8 (207-302)||(10114397-10114491)
chr8 (207-257)||(40859831-40859881)
[»] chr5 (6 HSPs)
chr5 (200-255)||(39105364-39105419)
chr5 (200-299)||(9202819-9202918)
chr5 (200-257)||(28776875-28776932)
chr5 (233-302)||(29588813-29588881)
chr5 (196-291)||(11835173-11835268)
chr5 (207-255)||(20982250-20982297)
[»] chr6 (1 HSPs)
chr6 (200-255)||(264271-264326)
[»] chr1 (4 HSPs)
chr1 (216-255)||(15942249-15942288)
chr1 (207-256)||(10744215-10744264)
chr1 (207-255)||(5894278-5894326)
chr1 (200-256)||(47498957-47499013)
[»] chr3 (2 HSPs)
chr3 (200-298)||(402614-402711)
chr3 (200-276)||(23815953-23816028)


Alignment Details
Target: chr2 (Bit Score: 178; Significance: 1e-95; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 326 - 611
Target Start/End: Original strand, 35926365 - 35926651
Alignment:
Q  326 gagagatacagtttatttcattgtatttaacatcatctcatttgtctttcnnnnnnnnnnnnnn-tccactatttgcttttactaaactaaatcaaatta 424  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||               |||||||||||||||||||||||||||||||||||    
T  35926365 gagagatacaatttatttcattgtatttaacatcatctcatttgtctttcaaaaaagaaaaaaaatccactatttgcttttactaaactaaatcaaatta 35926464  T
Q  425 cacattcaaggtataaatcttttccataataaagaaagtgattctaagttttcttttaggggtggggtttggtttcccttttgccatccgaaaattcaca 524  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  35926465 cacattcaaggtataaatcttttccataataaagaaagtgattctaagttttcttttaggggtggggtttggttt-ccttttgccatccgaaaattcaca 35926563  T
Q  525 ttggg-cgtgtctattttcaaatgtatttaccgcaaacttgtaaaactgaaaattgaaagatcatatttttatgcgttagaaggaaaa 611  Q
    ||||| ||||| || ||||||||||||| ||||||||||| | ||| || |||||||||||||| ||||||||| ||| |||||||||    
T  35926564 ttgggacgtgtgtactttcaaatgtattcaccgcaaacttatgaaattggaaattgaaagatcacatttttatgtgtttgaaggaaaa 35926651  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 233 - 302
Target Start/End: Complemental strand, 18962175 - 18962106
Alignment:
Q  233 aagtccttatgtataagctattttttataacaaaagagaata-aaaggtaaattgttttcatataagctat 302  Q
    |||| ||||||||| |||||||||| ||||||||||| || | |||| |||| ||||||||||||||||||    
T  18962175 aagtgcttatgtattagctattttt-ataacaaaagataaaataaagttaaactgttttcatataagctat 18962106  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 208 - 248
Target Start/End: Original strand, 36534696 - 36534736
Alignment:
Q  208 ttataacataagtgcttatcatgaaaagtccttatgtataa 248  Q
    |||||||||||||||||||||||| |||| ||| |||||||    
T  36534696 ttataacataagtgcttatcatgataagtgcttgtgtataa 36534736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 42826319 - 42826355
Alignment:
Q  233 aagtccttatgtataagctattttttataacaaaaga 269  Q
    |||| ||||| ||||||||||||||||||||||||||    
T  42826319 aagtgcttatatataagctattttttataacaaaaga 42826355  T

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Target: chr7 (Bit Score: 109; Significance: 2e-54; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 76 - 308
Target Start/End: Complemental strand, 25670871 - 25670648
Alignment:
Q  76 acccttcatctaattttgcctagaaacttaaagggtaccctccctttcatcatacattcatatgggg-gcataaagtttgtattttcttcacaacccttc 174  Q
    ||||||||| ||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||| |  |||||    
T  25670871 acccttcatttaattttgcttaaaaacttaaagggtaccctccctttcatcatacattcatatggggtgcataaagtttgtattttaatcatagtccttc 25670772  T
Q  175 atctaattttgcttaaaagggttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaata 274  Q
    |||||||||||||||||||  || ||||||| |||||||  ||      || |||   |||| ||||||||||||||| |||||||||||||||||||||    
T  25670771 atctaattttgcttaaaagactttttttgcagcttataagtta------taacat---aagtgcttatgtataagcta-tttttataacaaaagagaata 25670682  T
Q  275 aaaggtaaattgttttcatataagctatcaattg 308  Q
    |||||| || ||||||||||||||||||||||||    
T  25670681 aaaggtgaagtgttttcatataagctatcaattg 25670648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 25670976 - 25670922
Alignment:
Q  3 tatgttattcatctttcttctggaattgctggtttcactgctgcttattgggtaa 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25670976 tatgttattcatctttcttctggaattgctggtttcactgctgcttattgggtaa 25670922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 146 - 192
Target Start/End: Complemental strand, 25670893 - 25670847
Alignment:
Q  146 taaagtttgtattttcttcacaacccttcatctaattttgcttaaaa 192  Q
    |||| |||||||||| ||||||||||||||| |||||||||||||||    
T  25670893 taaattttgtatttttttcacaacccttcatttaattttgcttaaaa 25670847  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 251
Target Start/End: Complemental strand, 21568808 - 21568757
Alignment:
Q  200 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagct 251  Q
    |||||| |||||| |||||||||||||||||| |||  ||||||||||||||    
T  21568808 tttgcagcttatagcataagtgcttatcatgataagcacttatgtataagct 21568757  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 3 - 55
Target Start/End: Original strand, 47501682 - 47501734
Alignment:
Q  3 tatgttattcatctttcttctggaattgctggtttcactgctgcttattgggt 55  Q
    ||||||||||| || ||| ||||  |||||||||| |||||||||||||||||    
T  47501682 tatgttattcacctctctgctggtgttgctggttttactgctgcttattgggt 47501734  T

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Target: chr4 (Bit Score: 46; Significance: 6e-17; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 5625189 - 5625132
Alignment:
Q  1 gctatgttattcatctttcttctggaattgctggtttcactgctgcttattgggtaaa 58  Q
    |||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||    
T  5625189 gctatgttattcatctttcttctggaattggtggattcactgcagcttattgggtaaa 5625132  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 238 - 298
Target Start/End: Complemental strand, 437565 - 437504
Alignment:
Q  238 cttatgtataagctattttttataacaaaagagaata-aaaggtaaattgttttcatataag 298  Q
    |||||||||||||||||||||||| ||||||| || | |||| |||||||| ||||||||||    
T  437565 cttatgtataagctattttttatagcaaaagataaaataaagttaaattgtgttcatataag 437504  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 195 - 255
Target Start/End: Original strand, 2987084 - 2987144
Alignment:
Q  195 gttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 255  Q
    |||| |||||| ||||||||||||||| ||||||||| |||  ||||| ||||||||||||    
T  2987084 gttaatttgcagcttataacataagtgtttatcatgataagcacttatttataagctattt 2987144  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 46796926 - 46796974
Alignment:
Q  207 cttataacataagtgcttatcatgaaaagtccttatgtataagctatttt 256  Q
    ||||||||||||||||||||||| | |||| |||||| ||||||||||||    
T  46796926 cttataacataagtgcttatcat-ataagttcttatgcataagctatttt 46796974  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 6364062 - 6364117
Alignment:
Q  213 acataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaaga 269  Q
    |||||||||||||||| || |||  ||||||||||||||| ||| ||||||||||||    
T  6364062 acataagtgcttatcaagataagcacttatgtataagcta-tttctataacaaaaga 6364117  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 28615215 - 28615247
Alignment:
Q  196 ttattttgcatcttataacataagtgcttatca 228  Q
    |||||||||| ||||||||||||||||||||||    
T  28615215 ttattttgcagcttataacataagtgcttatca 28615247  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 3 - 55
Target Start/End: Complemental strand, 39726440 - 39726388
Alignment:
Q  3 tatgttattcatctttcttctggaattgctggtttcactgctgcttattgggt 55  Q
    ||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  39726440 tatgttattcatctttcttctgggattgctggtttcaccgctgcttattgggt 39726388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Complemental strand, 2833504 - 2833445
Alignment:
Q  196 ttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 255  Q
    |||||||||| |||||| |||||||||||||||||| |||| |||||| |||||||||||    
T  2833504 ttattttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagctattt 2833445  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 2840255 - 2840314
Alignment:
Q  196 ttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 255  Q
    |||||||||| |||||| |||||||||||||||||| |||| |||||| |||||||||||    
T  2840255 ttattttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagctattt 2840314  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 196 - 255
Target Start/End: Original strand, 2844942 - 2845001
Alignment:
Q  196 ttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 255  Q
    |||||||||| |||||| |||||||||||||||||| |||| |||||| |||||||||||    
T  2844942 ttattttgcagcttatagcataagtgcttatcatgataagtgcttatgaataagctattt 2845001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 42237547 - 42237490
Alignment:
Q  246 taagctattttttataacaaaagagaata-aaaggtaaattgttttcatataagctat 302  Q
    |||||| ||||||||||||||||| || | |||| |||||||||||||||||||||||    
T  42237547 taagctcttttttataacaaaagataaaataaagttaaattgttttcatataagctat 42237490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 9 - 57
Target Start/End: Original strand, 31606189 - 31606237
Alignment:
Q  9 attcatctttcttctggaattgctggtttcactgctgcttattgggtaa 57  Q
    |||||||| ||||||||  |||| |||||||||||||||||||||||||    
T  31606189 attcatctatcttctggtgttgcaggtttcactgctgcttattgggtaa 31606237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 207 - 302
Target Start/End: Original strand, 10114397 - 10114491
Alignment:
Q  207 cttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaataaaaggtaaattgttttcatataagctat 302  Q
    |||||| |||||||| |||| |||| |||| ||||||||||||||| ||| |||| ||||||| || | ||| | |||||||||  ||||||||||    
T  10114397 cttatagcataagtggttatgatgataagtgcttatgtataagcta-tttctatagcaaaagataaaataagttgaattgttttggtataagctat 10114491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 207 - 257
Target Start/End: Complemental strand, 40859881 - 40859831
Alignment:
Q  207 cttataacataagtgcttatcatgaaaagtccttatgtataagctattttt 257  Q
    |||||| || ||||||||||||||| |||  ||||||||||||||||||||    
T  40859881 cttatagcacaagtgcttatcatgataagcgcttatgtataagctattttt 40859831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000006; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 39105364 - 39105419
Alignment:
Q  200 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 255  Q
    |||||| |||||| |||||||||||||||||| |||  ||||||||||||||||||    
T  39105364 tttgcagcttatagcataagtgcttatcatgataagcgcttatgtataagctattt 39105419  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 200 - 299
Target Start/End: Complemental strand, 9202918 - 9202819
Alignment:
Q  200 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaata-aaaggtaaattgttttcatataag 298  Q
    |||||| |||||| || ||||| ||||||||| |||| ||||| |||||||||||| |  || ||||||| || | |||| |||||||||||||||||||    
T  9202918 tttgcagcttatagcacaagtgtttatcatgataagtgcttatatataagctatttctg-tagcaaaagataaaataaagttaaattgttttcatataag 9202820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 257
Target Start/End: Original strand, 28776875 - 28776932
Alignment:
Q  200 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttt 257  Q
    |||||| |||||| | ||||  |||||||||| |||| ||||||||||||||||||||    
T  28776875 tttgcagcttatagcctaagcacttatcatgataagtgcttatgtataagctattttt 28776932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 302
Target Start/End: Original strand, 29588813 - 29588881
Alignment:
Q  233 aagtccttatgtataagctattttttataacaaaagagaataaaaggtaaattgttttcatataagctat 302  Q
    |||| |||||||||||||||||| | ||||||||| | || | || | ||||||||||||||||||||||    
T  29588813 aagtgcttatgtataagctatttct-ataacaaaatataaaataatgaaaattgttttcatataagctat 29588881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 291
Target Start/End: Original strand, 11835173 - 11835268
Alignment:
Q  196 ttattttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaata-aaaggtaaattgttttc 291  Q
    ||||||||||  | |||||||||  ||||||||||| ||||  |||||||||| | | |||||||||||||||| || | |||| ||||||||||||    
T  11835173 ttattttgcaattcataacataaacgcttatcatgataagtgtttatgtataaacca-tttttataacaaaagataaaataaagttaaattgttttc 11835268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 20982297 - 20982250
Alignment:
Q  207 cttataacataagtgcttatcatgaaaagtccttatgtataagctattt 255  Q
    |||||| |||||||||||||||| | |||| ||||||||||||||||||    
T  20982297 cttatagcataagtgcttatcat-ataagtgcttatgtataagctattt 20982250  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 200 - 255
Target Start/End: Original strand, 264271 - 264326
Alignment:
Q  200 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattt 255  Q
    |||||| |||||| || ||||||||||||||| |||| ||||| ||||||||||||    
T  264271 tttgcagcttatagcacaagtgcttatcatgataagtgcttatatataagctattt 264326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 216 - 255
Target Start/End: Original strand, 15942249 - 15942288
Alignment:
Q  216 taagtgcttatcatgaaaagtccttatgtataagctattt 255  Q
    |||||||||||||||| |||| ||||||||||||||||||    
T  15942249 taagtgcttatcatgataagtgcttatgtataagctattt 15942288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 207 - 256
Target Start/End: Original strand, 10744215 - 10744264
Alignment:
Q  207 cttataacataagtgcttatcatgaaaagtccttatgtataagctatttt 256  Q
    |||||| |||||| ||||||||||| |||| || ||||||||||||||||    
T  10744215 cttatagcataagcgcttatcatgacaagtgctaatgtataagctatttt 10744264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 207 - 255
Target Start/End: Complemental strand, 5894326 - 5894278
Alignment:
Q  207 cttataacataagtgcttatcatgaaaagtccttatgtataagctattt 255  Q
    |||||| || ||||||||||||||| |||  ||||||||||||||||||    
T  5894326 cttatagcacaagtgcttatcatgataagcgcttatgtataagctattt 5894278  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 256
Target Start/End: Complemental strand, 47499013 - 47498957
Alignment:
Q  200 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctatttt 256  Q
    |||||| |||||| || ||||||||||||||| |||  ||| |||||||||||||||    
T  47499013 tttgcagcttatagcacaagtgcttatcatgataagcgcttgtgtataagctatttt 47498957  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000006; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 200 - 298
Target Start/End: Complemental strand, 402711 - 402614
Alignment:
Q  200 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaataaaaggtaaattgttttcatataag 298  Q
    |||||| || ||| || ||||||||||||||| |||  ||||||||||||||| ||| ||||  |||||| ||| |||  |||||||||||| ||||||    
T  402711 tttgcagctcatagcacaagtgcttatcatgataagggcttatgtataagcta-tttctatagaaaaagataattaaatttaaattgttttcgtataag 402614  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 276
Target Start/End: Original strand, 23815953 - 23816028
Alignment:
Q  200 tttgcatcttataacataagtgcttatcatgaaaagtccttatgtataagctattttttataacaaaagagaataaa 276  Q
    ||||||||||||| |  ||||||||||||||| |||  |||||||||||| || ||| ||||| |||||| ||||||    
T  23815953 tttgcatcttatagccaaagtgcttatcatgataagcacttatgtataagtta-tttctataataaaagataataaa 23816028  T

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