View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_high_10 (Length: 290)
Name: NF9201_high_10
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 248; Significance: 1e-138; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 22 - 285
Target Start/End: Complemental strand, 25423903 - 25423640
Alignment:
| Q |
22 |
atacataaattattactgcagggccttattaaactaggacaatcccgagatgataaattgagaagagtgacaccaaaactagatgaaggtgatattactt |
121 |
Q |
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| T |
25423903 |
atacataaattattactgcagggccttattaaactaggacaatccagagatgataaattgagaagagtgacaccaaaactagatgaaggtgatattactt |
25423804 |
T |
|
| Q |
122 |
ttgcgttgcaggtaatttttcattcccttgagccactgtatcatttgatttttatactaccttagattattgtgcttgtattggtagttactcatgagtt |
221 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
25423803 |
ttgcgttgcaggtaatttttcattcccttgagccactgtatcatttgatttttatactaccttagattattgtgcttgtattggtagttactcataagtt |
25423704 |
T |
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| Q |
222 |
ttgacgcctgaatgaatttcattgcagggaatccgcttttttcgaaattgtcttctgtgctcct |
285 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
25423703 |
ttgacgcctgaatgaatttcattgcagggaatccgcttttttcgaaattgtcttcagtgatcct |
25423640 |
T |
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