View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_high_4 (Length: 509)
Name: NF9201_high_4
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 16 - 493
Target Start/End: Original strand, 48961456 - 48961956
Alignment:
| Q |
16 |
gagagttcaagtgctgatgaaggaaaaataaacaagaaagataagaataacaaaggaagaacaaaatcttcaattccaatggctgcatacatgaacagca |
115 |
Q |
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| T |
48961456 |
gagagttcaagtgctgatgaaggaaaaataaacaagaaagataagaataacaaaggaagaacaaaatcttcaattccaatggctgcatacatgaacagca |
48961555 |
T |
|
| Q |
116 |
atgtacagtgtgtcaataactctctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagccatttggtgaagg |
215 |
Q |
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| T |
48961556 |
atgtacagtgtgtcaataactctctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagccatttggtgaagg |
48961655 |
T |
|
| Q |
216 |
ctaccatgtgaaggaacatgttgatggtcgcaatatttgattcgaagatagtgtttgaattgattgtagttggttctttctgtttgtttctggcttataa |
315 |
Q |
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| T |
48961656 |
ctaccatgtgaaggaaaatgttgatggttgcaatatttgattcgaagatagtgtttgaattgattgtagttggttctttctgtttgtttctggcttataa |
48961755 |
T |
|
| Q |
316 |
aggtatatggggaataaaggttgaagattctctccacttcatcattagtggaaaataaat--------gcatgcat--atggatgcat------------ |
393 |
Q |
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| T |
48961756 |
aggtatatggggaataaaggttgaagattctctccact---tcattagtggaaaataaatgtatggacgcatgcatgcatgcatgcatgcatatggatgc |
48961852 |
T |
|
| Q |
394 |
--gactttaactccaaccagatgctacctta--gttttctatgaaagatagatagagatcatgaatcttgtgtctattaagaatgggatgatggtttgtg |
489 |
Q |
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| T |
48961853 |
atgactttaactccaaccaggtgctaccttagtgttttctatgaaagatagatagagatcatgaatcttgtgtctattaagaatgggatgatggtttgtg |
48961952 |
T |
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| Q |
490 |
atat |
493 |
Q |
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|||| |
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| T |
48961953 |
atat |
48961956 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 103 - 218
Target Start/End: Original strand, 9485931 - 9486046
Alignment:
| Q |
103 |
tacatgaacagcaatgtacagtgtgtcaataactctctactgtatcatgcttcttgctcccatcatgatccaggagtgcgtctttctctctcaaagaagc |
202 |
Q |
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|||||||| |||||||| |||||||| ||||| || | | | ||||||||||| |||| ||||||||||| |||| ||| | || |||||||||| |
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| T |
9485931 |
tacatgaatagcaatgtgcagtgtgtgaataattcattgttattacatgcttcttgtacccaccatgatccaggggtgcaacttacactttcaaagaagc |
9486030 |
T |
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| Q |
203 |
catttggtgaaggcta |
218 |
Q |
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| T |
9486031 |
catttggtaaaggcta |
9486046 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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