View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9201_low_1 (Length: 1121)

Name: NF9201_low_1
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9201_low_1
NF9201_low_1
[»] chr5 (13 HSPs)
chr5 (11-1081)||(7907908-7908983)
chr5 (12-121)||(17258817-17258925)
chr5 (59-121)||(13244485-13244547)
chr5 (8-121)||(41112832-41112944)
chr5 (11-130)||(10125643-10125761)
chr5 (11-89)||(2568685-2568762)
chr5 (67-121)||(35095721-35095774)
chr5 (12-113)||(8089964-8090064)
chr5 (12-113)||(12459943-12460043)
chr5 (6-119)||(34975386-34975498)
chr5 (83-136)||(36542205-36542258)
chr5 (63-121)||(1961993-1962051)
chr5 (61-139)||(16937799-16937876)
[»] chr7 (15 HSPs)
chr7 (6-139)||(24363516-24363649)
chr7 (18-137)||(30535597-30535715)
chr7 (11-120)||(7244707-7244816)
chr7 (20-120)||(24967097-24967196)
chr7 (27-102)||(36537951-36538025)
chr7 (59-113)||(23214929-23214983)
chr7 (11-90)||(19022549-19022628)
chr7 (11-119)||(25670522-25670629)
chr7 (63-139)||(34744107-34744182)
chr7 (11-138)||(46082063-46082189)
chr7 (63-102)||(48131415-48131454)
chr7 (92-134)||(2895343-2895385)
chr7 (12-54)||(26935557-26935599)
chr7 (64-121)||(2825170-2825227)
chr7 (8-45)||(47134766-47134803)
[»] chr2 (26 HSPs)
chr2 (63-138)||(41170688-41170763)
chr2 (6-130)||(33192224-33192346)
chr2 (11-134)||(40158745-40158867)
chr2 (61-119)||(40776033-40776091)
chr2 (11-107)||(12313121-12313216)
chr2 (66-138)||(44064517-44064589)
chr2 (16-84)||(44606081-44606148)
chr2 (61-136)||(4350766-4350841)
chr2 (27-102)||(5902502-5902576)
chr2 (11-121)||(8017461-8017570)
chr2 (63-121)||(29430836-29430894)
chr2 (11-84)||(28677630-28677702)
chr2 (9-54)||(44443346-44443391)
chr2 (11-47)||(35379023-35379059)
chr2 (15-99)||(43199740-43199823)
chr2 (61-136)||(11513972-11514047)
chr2 (14-113)||(16551782-16551880)
chr2 (11-101)||(8187407-8187496)
chr2 (59-113)||(12140606-12140660)
chr2 (59-121)||(13866952-13867014)
chr2 (59-113)||(40145526-40145580)
chr2 (16-49)||(1493518-1493551)
chr2 (1-42)||(11393686-11393727)
chr2 (1-42)||(11410347-11410388)
chr2 (61-138)||(40400817-40400894)
chr2 (61-134)||(43530032-43530105)
[»] chr4 (20 HSPs)
chr4 (12-121)||(28615362-28615470)
chr4 (59-121)||(18628487-18628549)
chr4 (66-120)||(51555705-51555759)
chr4 (16-90)||(52315161-52315235)
chr4 (9-121)||(33534103-33534214)
chr4 (12-135)||(32831438-32831559)
chr4 (68-121)||(1017111-1017164)
chr4 (11-100)||(1137739-1137827)
chr4 (28-121)||(37575870-37575962)
chr4 (9-73)||(46110228-46110291)
chr4 (61-112)||(22471350-22471401)
chr4 (62-121)||(25487491-25487550)
chr4 (60-134)||(8328040-8328114)
chr4 (72-114)||(22772417-22772459)
chr4 (59-121)||(24087410-24087472)
chr4 (59-121)||(24091537-24091599)
chr4 (16-82)||(25332807-25332873)
chr4 (62-112)||(39178209-39178259)
chr4 (61-138)||(21731573-21731649)
chr4 (12-137)||(51560207-51560331)
[»] chr1 (24 HSPs)
chr1 (11-121)||(10199342-10199451)
chr1 (11-121)||(6292520-6292628)
chr1 (11-121)||(31517674-31517783)
chr1 (26-121)||(32515375-32515469)
chr1 (81-139)||(6231732-6231790)
chr1 (12-121)||(37593618-37593726)
chr1 (59-121)||(24313610-24313672)
chr1 (6-47)||(15361062-15361103)
chr1 (59-138)||(17420277-17420355)
chr1 (59-134)||(18327067-18327142)
chr1 (26-121)||(40413956-40414050)
chr1 (27-102)||(42757130-42757204)
chr1 (59-121)||(4757412-4757474)
chr1 (63-101)||(8810080-8810118)
chr1 (59-113)||(15581328-15581382)
chr1 (59-113)||(28348729-28348783)
chr1 (16-50)||(34290268-34290302)
chr1 (12-98)||(38170647-38170732)
chr1 (63-140)||(4033932-4034009)
chr1 (17-122)||(4768762-4768866)
chr1 (6-47)||(25479603-25479644)
chr1 (14-139)||(33723298-33723422)
chr1 (59-136)||(36070255-36070332)
chr1 (26-95)||(38578570-38578638)
[»] chr8 (13 HSPs)
chr8 (12-121)||(6950350-6950458)
chr8 (59-136)||(2487927-2488004)
chr8 (61-138)||(16162836-16162913)
chr8 (66-121)||(1664450-1664505)
chr8 (59-138)||(7918699-7918777)
chr8 (26-89)||(779027-779089)
chr8 (66-121)||(1892158-1892213)
chr8 (6-102)||(12851198-12851295)
chr8 (67-121)||(4560584-4560638)
chr8 (67-116)||(13652298-13652347)
chr8 (67-116)||(13710941-13710990)
chr8 (6-47)||(20672772-20672813)
chr8 (6-47)||(30389121-30389162)
[»] chr3 (17 HSPs)
chr3 (74-137)||(30657375-30657438)
chr3 (61-138)||(44014715-44014792)
chr3 (9-113)||(43115081-43115184)
chr3 (11-121)||(24281074-24281183)
chr3 (63-121)||(41848650-41848708)
chr3 (69-137)||(25459548-25459616)
chr3 (6-137)||(11253523-11253653)
chr3 (14-121)||(42745068-42745174)
chr3 (92-139)||(44237524-44237571)
chr3 (16-86)||(47249455-47249524)
chr3 (59-113)||(50211809-50211863)
chr3 (11-96)||(14548680-14548764)
chr3 (64-137)||(35903085-35903158)
chr3 (80-121)||(40665514-40665555)
chr3 (16-101)||(45541603-45541687)
chr3 (59-136)||(48286729-48286806)
chr3 (9-42)||(51206510-51206543)
[»] chr6 (12 HSPs)
chr6 (59-127)||(27857432-27857500)
chr6 (11-114)||(10031759-10031861)
chr6 (59-121)||(26559173-26559235)
chr6 (93-139)||(31672445-31672491)
chr6 (16-101)||(769170-769254)
chr6 (14-50)||(31420975-31421011)
chr6 (66-130)||(34429639-34429703)
chr6 (12-102)||(30863274-30863363)
chr6 (63-121)||(31774455-31774513)
chr6 (80-121)||(7351605-7351646)
chr6 (6-119)||(7945820-7945932)
chr6 (12-45)||(9027606-9027639)
[»] scaffold0199 (1 HSPs)
scaffold0199 (66-121)||(6891-6946)
[»] scaffold0141 (1 HSPs)
scaffold0141 (59-121)||(9712-9774)
[»] scaffold0064 (1 HSPs)
scaffold0064 (73-138)||(53758-53823)


Alignment Details
Target: chr5 (Bit Score: 1027; Significance: 0; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 1027; E-Value: 0
Query Start/End: Original strand, 11 - 1081
Target Start/End: Original strand, 7907908 - 7908983
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||    
T  7907908 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacagtctcataagtgtttatgttattaga 7908007  T
Q  111 taaactcaaatgaaccaattcaaacaggttctcatttgggatcccttggatactgattaattttcttctggaacagtggaggtatcccacattgctttcc 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908008 taaactcaaatgaaccaattcaaacaggttctcatttgggatcccttggatactgattaattttcttctggaacagtggaggtatcccacattgctttcc 7908107  T
Q  211 acagtttggtcctggtgcaattcagcaggtatgttccttcattca-tgttattttcttgcaggttcatgttgttctgtttttcaatattacgtatgttca 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||||||||||||    
T  7908108 acagtttggtcctggtgcaattcagcaggtatgttccttcattcaatgttattttcttgcaagttcatgttgttctgttttttaatattacgtatgttca 7908207  T
Q  310 attcaattacaaaaaatttatgactaattggttttggtatgacggctatatacatgctattttatgtagcttagtgaaaatagtgattgcaacttttgtg 409  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908208 attcaattacaaaaaatttatgactaattggttttggtatgacggctatatacatgctattttatgtagcttagtgaaaatagtgattgcaacttttgtg 7908307  T
Q  410 cttaatatttggttgataaaagttgcttctctttgactgaaaattaagagtaatttactgtgatgacttgttaaaatgtttgtttggttgagttttcgac 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908308 cttaatatttggttgataaaagttgcttctctttgactgaaaattaagagtaatttactgtgatgacttgttaaaatgtttgtttggttgagttttcgac 7908407  T
Q  510 agcatgggtttgcaaggaatttggattggactgttggtgattctgagaatgtcgagggaaatcctgttgtaactctggaactgaaggatgatacgtatag 609  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908408 agcatgggtttgcaaggaatttggattggactgttggtgattctgagaatgtcgagggaaatcctgttgtaactctggaactgaaggatgatacgtatag 7908507  T
Q  610 tcgtgctatgtgggatttcagctttcatgctttatataaggttgtcaaggacttgttttcttcaagcacaactcacattttcaatactactagattacga 709  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  7908508 tcgtgctatgtgggatttcagctttcatgctttatataaggttgtcaaggacttgttttcttcaagcacaactcactttttcaatactactagattacga 7908607  T
Q  710 ttctgttaccaaatcatgatgtgatttcatgctttcatttttgtaggtcacactaaatgctaaaagtctttcgactgagttaaaagttaaaaatactgac 809  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908608 ttctgttaccaaatcatgatgtgatttcatgctttcatttttgtaggtcacactaaatgctaaaagtctttcgactgagttaaaagttaaaaatactgac 7908707  T
Q  810 aataaggcattctcattcaataccgccctgcacacatactttcgggtaaatttgaataatcactaaatagggttttatatttgtgcttgaatattattgt 909  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908708 aataaggcattctcattcaataccgctctgcacacatactttcgggtaaatttgaataatcactaaatagggttttatatttgtgcttgaatattattgt 7908807  T
Q  910 gacatttggtattatgtttgctggatatctgaattctgaacggatactaagcatctgacgatgcctaaccaagtacagatgattttcatccaatta---- 1005  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        
T  7908808 gacatttggtattatgtttgctggatatctgaattctgaacggatactaagcatctgacgatgcctaaccaagtacagatgattttcatccaattattgt 7908907  T
Q  1006 ttgaatgagttgaaattattcaaatgcatggttttttaactcaattttattgcttacacttgctgcttaaactttt 1081  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7908908 ttgaatgagttgaaattattcaaatgcatggttttttaactcaattttattgcttacacttgctgcttaaactttt 7908983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 17258925 - 17258817
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagat 111  Q
    ||||||||||||| ||||||||||||| |||||||| || ||| || | | |||||||| ||||| ||||| ||| ||| ||||| |||||||||| |||    
T  17258925 agagcttatgaaaataagctgaaaacagcttatgaacatgtca-taagctattttcataggttctcccaaagaatgtcacaagtgcttatgttagttgat 17258827  T
Q  112 aaactcaaat 121  Q
    || |||||||    
T  17258826 aagctcaaat 17258817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 13244547 - 13244485
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||||||||||| ||||||||||| | |||||||||||||| | | |||||||||||||||    
T  13244547 gttgttttcataagctcttccaaacagtgtcataagtgtttatttcaatagataaactcaaat 13244485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 8 - 121
Target Start/End: Complemental strand, 41112944 - 41112832
Alignment:
Q  8 cttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagt 107  Q
    ||||||||||||||||| ||||| |||||||  ||| ||| || |||| | | | |||||||||||||| ||| ||||| ||| |||||||||||  |||    
T  41112944 cttgagagcttatgaaaataagccgaaaacagattacgaacatgtcagaa-gctattttcataagttctgccagacaatgtcacaagtgtttatgcaagt 41112846  T
Q  108 agataaactcaaat 121  Q
    |||||| |||||||    
T  41112845 agataagctcaaat 41112832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 130
Target Start/End: Complemental strand, 10125761 - 10125643
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    |||||||||||||| ||||||||||||| ||||| || || ||| || ||||||| ||||||||||  || ||||| ||| ||||| | |||| ||||||    
T  10125761 gagagcttatgaaaataagctgaaaacaccttatcaacatgtca-taagttgtttacataagttctctcagacaatgtcacaagtgctcatgtcagtaga 10125663  T
Q  111 taaactcaaatgaaccaatt 130  Q
    ||| || |||| | ||||||    
T  10125662 taagcttaaataagccaatt 10125643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 2568685 - 2568762
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctc 89  Q
    ||||||| |||||| |||||| |||| ||||||||||||| ||| || | |||||||||||||||||| ||||| ||||    
T  2568685 gagagctaatgaaaataagctaaaaataacttatgaatatgtca-taagctgttttcataagttcttctaaacagtctc 2568762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 121
Target Start/End: Complemental strand, 35095774 - 35095721
Alignment:
Q  67 cataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||| ||||||||||| |||||| ||||||||| |||||||||||||||||||    
T  35095774 cataagctcttccaaacagtctcattagtgtttat-ttagtagataaactcaaat 35095721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 113
Target Start/End: Original strand, 8089964 - 8090064
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagat 111  Q
    ||||||||||||| ||||||||||||| |||| |||||| ||| || |||||||||||||| |||  |||| | ||||   |||| || |||||||||||    
T  8089964 agagcttatgaaaataagctgaaaacagcttaggaatatatca-taagttgttttcataagctctctcaaatagtctcgcgagtgcttgtgttagtagat 8090062  T
Q  112 aa 113  Q
    ||    
T  8090063 aa 8090064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 113
Target Start/End: Complemental strand, 12460043 - 12459943
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagat 111  Q
    ||||||||||||| |||||  |||||||| |||||| || ||| || |||||||||||| ||||| ||||||| ||||| | ||| |||||| || ||||    
T  12460043 agagcttatgaaaataagccaaaaacaacatatgaacatgtca-taagttgttttcataggttctcccaaacagtctcacaggtgcttatgtcagcagat 12459945  T
Q  112 aa 113  Q
    ||    
T  12459944 aa 12459943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 119
Target Start/End: Original strand, 34975386 - 34975498
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgtta 105  Q
    |||| ||||||| ||| || |||||||||||| | ||||| |||| ||| |||  |||||  || || |||| |||||| ||||||||||| ||||||||    
T  34975386 tcctggagagctaatggaaataagctgaaaacgatttatggatatgtca-tactatgtttggatgagctctttcaaacagtctcataagtgattatgtta 34975484  T
Q  106 gtagataaactcaa 119  Q
    |||||||| |||||    
T  34975485 gtagataagctcaa 34975498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 36542258 - 36542205
Alignment:
Q  83 caatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaaca 136  Q
    |||||||||||||| |||||||||||||||| ||||||  | ||||||||||||    
T  36542258 caatctcataagtgcttatgttagtagataagctcaaacaagccaattcaaaca 36542205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 1961993 - 1962051
Alignment:
Q  63 ttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||||||| | |||| |||| ||||| |||||||||| | |||||||||||||||||    
T  1961993 ttttcataagctattccgaacattctcacaagtgtttatatgagtagataaactcaaat 1962051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 61 - 139
Target Start/End: Complemental strand, 16937876 - 16937799
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacaggt 139  Q
    |||||||||||||||||||||||| ||||| ||    ||||| |||||||||| ||||||| | ||||| |||||||||    
T  16937876 tgttttcataagttcttccaaacactctcacaa-aacttatgctagtagataagctcaaataagccaatccaaacaggt 16937799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 54; Significance: 2e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 54; E-Value: 2e-21
Query Start/End: Original strand, 6 - 139
Target Start/End: Complemental strand, 24363649 - 24363516
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgtta 105  Q
    |||| ||||| ||||| || |||||||||||||||||||| | || ||| ||| |||||| | ||||  || |||||| |||||||||||| ||||| ||    
T  24363649 tcctggagaggttatggaaataagctgaaaacaacttatggacatgtcaataccttgtttccttaaggcctcccaaactatctcataagtgcttatgcta 24363550  T
Q  106 gtagataaactcaaatgaaccaattcaaacaggt 139  Q
    |||||||||||||||| || |||| |||||||||    
T  24363549 gtagataaactcaaataaaacaatccaaacaggt 24363516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 137
Target Start/End: Original strand, 30535597 - 30535715
Alignment:
Q  18 tatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactc 117  Q
    ||||||| ||| ||||||||| |||| ||| || ||| || |||||||||||||||||| | ||||| ||||  |||||||||||| |||| || |||||    
T  30535597 tatgaaaataacctgaaaacagcttacgaacatatca-taagttgttttcataagttctccaaaacagtctctcaagtgtttatgtcagtaaattaactc 30535695  T
Q  118 aaatgaaccaattcaaacag 137  Q
    |||| |  ||||||||||||    
T  30535696 aaataagtcaattcaaacag 30535715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 120
Target Start/End: Original strand, 7244707 - 7244816
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaac-aatctcataagtgtttatgttagtag 109  Q
    |||||||||||||| |||||||||||||||||||||  || ||| ||  |||||| ||| || |||| ||||| ||||| | |||||||||||  |||||    
T  7244707 gagagcttatgaaaataagctgaaaacaacttatgagcatgtca-taaattgtttccatcagctctttcaaacaaatcttagaagtgtttatggcagtag 7244805  T
Q  110 ataaactcaaa 120  Q
    |||||||||||    
T  7244806 ataaactcaaa 7244816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 20 - 120
Target Start/End: Original strand, 24967097 - 24967196
Alignment:
Q  20 tgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaa 119  Q
    ||||| ||||||||||||||||| || |||| | | || ||||||| |||||  ||||||||||| |||||||| |||||||  |||||||||| |||||    
T  24967097 tgaaaataagctgaaaacaacttctggatatgtta-taagttgtttccataatctcttccaaacagtctcataaatgtttatactagtagataagctcaa 24967195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Original strand, 36537951 - 36538025
Alignment:
Q  27 aagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatg 102  Q
    ||||| ||||||||||||||| || ||| || ||||||| ||||||||||  |||||||||||| |||||||||||    
T  36537951 aagctaaaaacaacttatgaacatgtca-taagttgtttccataagttctctcaaacaatctcacaagtgtttatg 36538025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 23214929 - 23214983
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataa 113  Q
    ||||||||||||| ||||  |||||| ||||||||||||||||| ||||||||||    
T  23214929 gttgttttcataaattctctcaaacagtctcataagtgtttatgctagtagataa 23214983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 90
Target Start/End: Complemental strand, 19022628 - 19022549
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatt-tcagtacgttgttttcataagttcttccaaacaatctca 90  Q
    |||| ||||||||| |||| |||| |||||||||||| ||| ||| || ||||||||||||| |||| |||||||||||||    
T  19022628 gagaacttatgaaaataagttgaagacaacttatgaaaattgtca-taagttgttttcataaattctcccaaacaatctca 19022549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 119
Target Start/End: Complemental strand, 25670629 - 25670522
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    |||||||| ||||| |||||||||||||| |||| || || ||| || |||||||||||||||| |  |||||| ||||| ||| | |||||| | ||||    
T  25670629 gagagcttgtgaaaataagctgaaaacaatttattaacatgtca-taagttgttttcataagttttctcaaacagtctcacaagagcttatgtcaataga 25670531  T
Q  111 taaactcaa 119  Q
    ||| |||||    
T  25670530 taagctcaa 25670522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 63 - 139
Target Start/End: Original strand, 34744107 - 34744182
Alignment:
Q  63 ttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacaggt 139  Q
    ||||||| |||||||||||||| ||||| || | || |||||||||||||| ||||||| |  ||||||||||||||    
T  34744107 ttttcattagttcttccaaacagtctcacaaatctt-atgttagtagataagctcaaattattcaattcaaacaggt 34744182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 138
Target Start/End: Original strand, 46082063 - 46082189
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    |||||||||||||| ||||||||||||||||||||   || ||| || |||||||||||||| |||    |||| ||||| || ||||||||  |||||     
T  46082063 gagagcttatgaaaataagctgaaaacaacttatggtcatgtca-taagttgttttcataagctctcattaacagtctcaaaattgtttatgccagtagg 46082161  T
Q  111 taaactcaaatgaaccaattcaaacagg 138  Q
    |||  |||||| | ||||| ||||||||    
T  46082162 taagatcaaattagccaatccaaacagg 46082189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 102
Target Start/End: Original strand, 48131415 - 48131454
Alignment:
Q  63 ttttcataagttcttccaaacaatctcataagtgtttatg 102  Q
    |||||||||||||||||||||| ||||||||||| |||||    
T  48131415 ttttcataagttcttccaaacagtctcataagtgcttatg 48131454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 92 - 134
Target Start/End: Original strand, 2895343 - 2895385
Alignment:
Q  92 aagtgtttatgttagtagataaactcaaatgaaccaattcaaa 134  Q
    ||||||||||| |||||||||| |||||||||||| |||||||    
T  2895343 aagtgtttatgctagtagataatctcaaatgaaccgattcaaa 2895385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 54
Target Start/End: Complemental strand, 26935599 - 26935557
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttca 54  Q
    |||||||||| || ||||||||||||| |||||||||||||||    
T  26935599 agagcttatggaaataagctgaaaacagcttatgaatatttca 26935557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 121
Target Start/End: Complemental strand, 2825227 - 2825170
Alignment:
Q  64 tttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||||||||||||||| | ||||| ||||| |||| | ||||||||| |||||||    
T  2825227 tttcataagttcttccaaagagtctcacaagtgcttatataagtagataagctcaaat 2825170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 45
Target Start/End: Complemental strand, 47134803 - 47134766
Alignment:
Q  8 cttgagagcttatgaaattaagctgaaaacaacttatg 45  Q
    ||||| ||||||||||| ||||||||||||||||||||    
T  47134803 cttgaaagcttatgaaaataagctgaaaacaacttatg 47134766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 48; Significance: 7e-18; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 63 - 138
Target Start/End: Original strand, 41170688 - 41170763
Alignment:
Q  63 ttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacagg 138  Q
    |||||||||||| ||||||| | ||||| |||||||||||||||||||||||||||||| | ||||| ||||||||    
T  41170688 ttttcataagttattccaaatagtctcacaagtgtttatgttagtagataaactcaaataagccaatccaaacagg 41170763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 33192224 - 33192346
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgtta 105  Q
    |||| |||||||||| ||  ||||||||||||| |||||| |||| ||| ||   |||||||||||||||||| ||||| |||||| ||||||||||| |    
T  33192224 tcctggagagcttataaatataagctgaaaacagcttatggatatgtca-taaactgttttcataagttcttc-aaacagtctcatgagtgtttatgtca 33192321  T
Q  106 gtagataaactcaaatgaaccaatt 130  Q
    | |||||| ||||||| | ||||||    
T  33192322 gcagataagctcaaataagccaatt 33192346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 11 - 134
Target Start/End: Original strand, 40158745 - 40158867
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    ||||||||||| |||||||||||||||||||||| || || ||| || | |||||||||||||||  |||| || ||||| ||||  |||||| ||||||    
T  40158745 gagagcttatgtaattaagctgaaaacaacttataaacatgtca-taagctgttttcataagttcccccaatcagtctcacaagttcttatgtcagtaga 40158843  T
Q  111 taaactcaaatgaaccaattcaaa 134  Q
    ||  ||||||| | ||||| ||||    
T  40158844 tatgctcaaataagccaatccaaa 40158867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 61 - 119
Target Start/End: Complemental strand, 40776091 - 40776033
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaa 119  Q
    ||||||||||||||||||||||||   | ||||||| ||||||||||||||||||||||    
T  40776091 tgttttcataagttcttccaaacaggtttataagtgcttatgttagtagataaactcaa 40776033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 11 - 107
Target Start/End: Complemental strand, 12313216 - 12313121
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagt 107  Q
    |||||||||||||| |||| ||||| ||||||||||| ||  || || | ||||||||||| |||| ||||||||||||| ||||| ||||| ||||    
T  12313216 gagagcttatgaaaataaggtgaaatcaacttatgaacatggca-taagctgttttcataaattctcccaaacaatctcacaagtgcttatgctagt 12313121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 66 - 138
Target Start/End: Original strand, 44064517 - 44064589
Alignment:
Q  66 tcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacagg 138  Q
    ||||||||||||||||||| ||||| ||||    ||||||| |||||||||||||||| |||| |||||||||    
T  44064517 tcataagttcttccaaacagtctcacaagttccaatgttagcagataaactcaaatgatccaaatcaaacagg 44064589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 84
Target Start/End: Complemental strand, 44606148 - 44606081
Alignment:
Q  16 cttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaaca 84  Q
    ||||||||| | |||||||||||||||||| | || ||| || ||||||||||||||||||||||||||    
T  44606148 cttatgaaaatcagctgaaaacaacttatggacatgtca-taagttgttttcataagttcttccaaaca 44606081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 4350766 - 4350841
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaaca 136  Q
    ||||||||||||||||  ||||||||||| |||||| |||||| |||||| || ||||||| | ||||| ||||||    
T  4350766 tgttttcataagttctctcaaacaatctcttaagtgcttatgtcagtagagaagctcaaataagccaatccaaaca 4350841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 5902576 - 5902502
Alignment:
Q  27 aagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatg 102  Q
    ||||||||||||  ||||||| || ||| || | |||||||||||||||||||||||| ||||| |||||||||||    
T  5902576 aagctgaaaacagtttatgaacatgtca-taagctgttttcataagttcttccaaacagtctcacaagtgtttatg 5902502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 8017461 - 8017570
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    |||| ||||||||| || || |||||||| ||||||| || ||| || | |||||||||||||||| ||||| |||| || ||||| |||||| | ||||    
T  8017461 gagaacttatgaaaatacgcagaaaacaaattatgaacatatca-taagctgttttcataagttctcccaaataatcgcacaagtgcttatgtcaataga 8017559  T
Q  111 taaactcaaat 121  Q
    ||| |||||||    
T  8017560 taacctcaaat 8017570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 29430836 - 29430894
Alignment:
Q  63 ttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||||||||||||||||| | || || |||||||||||| ||||||||| |||||||    
T  29430836 ttttcataagttcttccaaatagtcccacaagtgtttatgtcagtagataagctcaaat 29430894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 84
Target Start/End: Complemental strand, 28677702 - 28677630
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaaca 84  Q
    ||||||||||| || ||||| |||||||||||||||| || ||| || | |||||||||||||||| |||||||    
T  28677702 gagagcttatggaaataagccgaaaacaacttatgaaaatgtca-taagctgttttcataagttctcccaaaca 28677630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 9 - 54
Target Start/End: Original strand, 44443346 - 44443391
Alignment:
Q  9 ttgagagcttatgaaattaagctgaaaacaacttatgaatatttca 54  Q
    |||||||| ||||||| |||||||||||||||||||||| ||||||    
T  44443346 ttgagagcatatgaaaataagctgaaaacaacttatgaacatttca 44443391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 11 - 47
Target Start/End: Complemental strand, 35379059 - 35379023
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaa 47  Q
    |||||||||||||| ||||||||||||||||||||||    
T  35379059 gagagcttatgaaaataagctgaaaacaacttatgaa 35379023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 99
Target Start/End: Complemental strand, 43199823 - 43199740
Alignment:
Q  15 gcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgttt 99  Q
    |||||||||||||||||||||||||||||| || || |||  | ||||| ||| ||| |||| ||||||| ||||| ||||||||    
T  43199823 gcttatgaaattaagctgaaaacaacttataaacatgtca-caagttgtattcgtaacttctcccaaacagtctcacaagtgttt 43199740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 11513972 - 11514047
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaaca 136  Q
    |||||||||||| |||   ||||| ||||| ||||| ||||| |||||||||| ||||||| ||||||| ||||||    
T  11513972 tgttttcataagctctctaaaacagtctcacaagtgcttatgctagtagataatctcaaataaaccaatccaaaca 11514047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 113
Target Start/End: Complemental strand, 16551880 - 16551782
Alignment:
Q  14 agcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataa 113  Q
    |||||||| || ||||||||| |||||||||| |||| ||| || | | ||| |||||| ||||| ||||||||||  |||||||||||| | |||||||    
T  16551880 agcttatggaaataagctgaatacaacttatgtatatgtca-taagatctttccataagctcttctaaacaatctcgcaagtgtttatgtcaatagataa 16551782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 101
Target Start/End: Complemental strand, 8187496 - 8187407
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttat 101  Q
    ||||| ||||| || ||| |||||||||||||  ||| |||||| || ||||| ||||||||||||| |||||| ||||| ||||| ||||    
T  8187496 gagagattatggaaataacctgaaaacaacttgcgaaaatttca-taagttgtattcataagttctttcaaacagtctcacaagtggttat 8187407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 12140606 - 12140660
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataa 113  Q
    ||||||||||||||||||  ||||| || || ||||||||||||| |||||||||    
T  12140606 gttgttttcataagttctctcaaactatttcgtaagtgtttatgtcagtagataa 12140660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 13866952 - 13867014
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||||| ||||||||  |||||| ||||| |||||||||||  ||||||||| |||||||    
T  13866952 gttgttttcttaagttctctcaaacagtctcacaagtgtttatggcagtagataagctcaaat 13867014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 40145526 - 40145580
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataa 113  Q
    |||||||  |||||||||  ||||||| ||||||||||||||||| |||||||||    
T  40145526 gttgtttcgataagttctctcaaacaagctcataagtgtttatgtcagtagataa 40145580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 1493551 - 1493518
Alignment:
Q  16 cttatgaaattaagctgaaaacaacttatgaata 49  Q
    ||||||||| ||||||||||||||||||||||||    
T  1493551 cttatgaaaataagctgaaaacaacttatgaata 1493518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11393727 - 11393686
Alignment:
Q  1 gctagtccttgagagcttatgaaattaagctgaaaacaactt 42  Q
    |||| |||||||||| ||||||||||||| ||||||||||||    
T  11393727 gctaatccttgagagattatgaaattaagttgaaaacaactt 11393686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 11410388 - 11410347
Alignment:
Q  1 gctagtccttgagagcttatgaaattaagctgaaaacaactt 42  Q
    |||| |||||||||| ||||||||||||| ||||||||||||    
T  11410388 gctaatccttgagagattatgaaattaagttgaaaacaactt 11410347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 40400894 - 40400817
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacagg 138  Q
    |||||||||||||| || |||||||| ||| |||| ||||||| ||||||||  || |||| | ||||| ||||||||    
T  40400894 tgttttcataagttttttcaaacaatgtcacaagtctttatgtcagtagataggcttaaataagccaatccaaacagg 40400817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 43530105 - 43530032
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaa 134  Q
    |||||||||||||||| |||| || ||||| |||||  ||||||||||||| | ||||||| | |||| |||||    
T  43530105 tgttttcataagttctcccaagcactctcacaagtgcatatgttagtagattagctcaaataagccaaatcaaa 43530032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 3e-17; HSPs: 20)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 28615362 - 28615470
Alignment:
Q  12 agagcttatgaaattaagctgaaaa-caacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    ||||||||||||| |||||  |||| ||||||||||| || ||| || | |||||||||||||||| ||||||||||||| ||||||||||| |||||||    
T  28615362 agagcttatgaaaataagccaaaaaacaacttatgaaaatgtcatta-gctgttttcataagttct-ccaaacaatctcacaagtgtttatgctagtaga 28615459  T
Q  111 taaactcaaat 121  Q
    |||||| ||||    
T  28615460 taaacttaaat 28615470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 18628549 - 18628487
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||||||||||| ||| ||||||| ||||| |||||||||||| ||||||||| |||||||    
T  18628549 gttgttttcataagctctcccaaacagtctcacaagtgtttatgtcagtagataagctcaaat 18628487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 66 - 120
Target Start/End: Complemental strand, 51555759 - 51555705
Alignment:
Q  66 tcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaa 120  Q
    ||||||| ||||| ||||||||||||||||| |||||| ||||||||||||||||    
T  51555759 tcataagctcttctaaacaatctcataagtgcttatgtgagtagataaactcaaa 51555705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 16 - 90
Target Start/End: Complemental strand, 52315235 - 52315161
Alignment:
Q  16 cttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctca 90  Q
    ||||||||| |||||||||| ||||||||||||| |    || |||||||| |||||||||||||||||||||||    
T  52315235 cttatgaaaataagctgaaagcaacttatgaataatgtgataagttgttttgataagttcttccaaacaatctca 52315161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 121
Target Start/End: Complemental strand, 33534214 - 33534103
Alignment:
Q  9 ttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagta 108  Q
    |||||||||||||||| |||||||||||||||||||| |||| |||  |  ||||||||||||| |||  |||| | ||||| ||||  |||||| | ||    
T  33534214 ttgagagcttatgaaaataagctgaaaacaacttatggatatgtca-caatttgttttcataagctctctcaaatactctcacaagtacttatgtcacta 33534116  T
Q  109 gataaactcaaat 121  Q
    ||||| |||||||    
T  33534115 gataagctcaaat 33534103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 12 - 135
Target Start/End: Complemental strand, 32831559 - 32831438
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagat 111  Q
    |||||||||||||| |||||||||| | ||||||||||| | | || |||||||||||  ||||| |||||   | ||| ||||| |||||| |||||||    
T  32831559 agagcttatgaaat-aagctgaaaatatcttatgaatatgtta-taagttgttttcatctgttctcccaaaaggtatcaaaagtgcttatgtcagtagat 32831462  T
Q  112 aaactcaaatgaaccaattcaaac 135  Q
    || ||||||||| ||||| |||||    
T  32831461 aagctcaaatgagccaatccaaac 32831438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 1017111 - 1017164
Alignment:
Q  68 ataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||||||||||||| ||||| |||||||||||| ||||||| | |||||||    
T  1017111 ataagttcttccaaacagtctcacaagtgtttatgtcagtagattagctcaaat 1017164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 100
Target Start/End: Original strand, 1137739 - 1137827
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgttta 100  Q
    ||||||||||| || ||| |||||||||||||||||| || ||| || | |||||||||||||||| | ||||| | ||| |||||||||    
T  1137739 gagagcttatggaaataaactgaaaacaacttatgaacatgtca-taagatgttttcataagttctcctaaacagtgtcacaagtgttta 1137827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 28 - 121
Target Start/End: Complemental strand, 37575962 - 37575870
Alignment:
Q  28 agctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||||||||||||||| ||| | | || ||| ||||||||||||||  |||||||| |||  || ||||||| ||| ||||||||||||||    
T  37575962 agctgaaaacaacttatgagtatgtta-taagttattttcataagttctctcaaacaatgtcacgagagtttatgctagcagataaactcaaat 37575870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 9 - 73
Target Start/End: Original strand, 46110228 - 46110291
Alignment:
Q  9 ttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagt 73  Q
    ||||||||||||  || ||||||||||||||||||||| ||| ||| || |||||||||||||||    
T  46110228 ttgagagcttatagaaataagctgaaaacaacttatgagtatatca-taagttgttttcataagt 46110291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Original strand, 22471350 - 22471401
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagata 112  Q
    |||||||||||||||| ||||||| ||||| ||||| |||||| ||||||||    
T  22471350 tgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagata 22471401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 121
Target Start/End: Complemental strand, 25487550 - 25487491
Alignment:
Q  62 gttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||| |||||| ||||||||||||||| | ||||| ||||| || |||||||||||||||    
T  25487550 gtttgcataagctcttccaaacaatcttacaagtgcttatgctaatagataaactcaaat 25487491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 134
Target Start/End: Complemental strand, 8328114 - 8328040
Alignment:
Q  60 ttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaa 134  Q
    ||||||||||||| | ||||||||| ||||||||||| |||||  | ||||||| |||||||  | |||||||||    
T  8328114 ttgttttcataagctattccaaacagtctcataagtgcttatgccaatagataagctcaaatacatcaattcaaa 8328040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 22772459 - 22772417
Alignment:
Q  72 gttcttccaaacaatctcataagtgtttatgttagtagataaa 114  Q
    ||||| ||||||||||||| ||||||||||| |||||||||||    
T  22772459 gttctcccaaacaatctcaaaagtgtttatgctagtagataaa 22772417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 24087410 - 24087472
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||| |||||||||| | ||||| | |   ||||||||||||||||||||||||||||||    
T  24087410 gttgtttccataagttctccaaaacagtttggcaagtgtttatgttagtagataaactcaaat 24087472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 24091537 - 24091599
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||| |||||||||| | ||||| | |   ||||||||||||||||||||||||||||||    
T  24091537 gttgtttccataagttctccaaaacagtttggcaagtgtttatgttagtagataaactcaaat 24091599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 82
Target Start/End: Original strand, 25332807 - 25332873
Alignment:
Q  16 cttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaa 82  Q
    ||||||||| |||||||||||||||||||||||| | |  || |||||||||  ||||||| |||||    
T  25332807 cttatgaaaataagctgaaaacaacttatgaataatgccataagttgttttcgcaagttctcccaaa 25332873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 39178259 - 39178209
Alignment:
Q  62 gttttcataagttcttccaaacaatctcataagtgtttatgttagtagata 112  Q
    ||||||||||||||| ||||||| | ||| |||||||||||| ||||||||    
T  39178259 gttttcataagttctcccaaacagtgtcaaaagtgtttatgtcagtagata 39178209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 21731649 - 21731573
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacagg 138  Q
    |||||||||||||||| ||||||||||||| ||    |||||| ||||||||  ||||||| ||||||| ||||||||    
T  21731649 tgttttcataagttctcccaaacaatctcacaa-aacttatgtcagtagatatgctcaaataaaccaatccaaacagg 21731573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 137
Target Start/End: Complemental strand, 51560331 - 51560207
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagat 111  Q
    |||| |||||| | |||||| ||||||| ||||||| || | | || | |||||||||||| ||| ||||| | ||||||||||| |||||  |||||||    
T  51560331 agagattatgagaataagctaaaaacaagttatgaacatgtga-taaggtgttttcataaggtctcccaaagagtctcataagtgcttatgccagtagat 51560233  T
Q  112 aaactcaaatgaaccaattcaaacag 137  Q
    || |||| || || ||||| ||||||    
T  51560232 aagctcatataaagcaattgaaacag 51560207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 3e-17; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 10199451 - 10199342
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    |||||||||||||| |||||||||||||||||||||| || ||| || | | ||||||| |||||| ||||| | | ||| ||||| |||||||||||||    
T  10199451 gagagcttatgaaaataagctgaaaacaacttatgaacatgtca-taagctattttcatgagttctcccaaatagtgtcacaagtgcttatgttagtaga 10199353  T
Q  111 taaactcaaat 121  Q
    ||| |||||||    
T  10199352 taagctcaaat 10199342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 6292520 - 6292628
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    |||||||||||||| ||||||||||||| |||||||| || ||| || | |||||| | || |||| ||||||||||||| ||||| |||||| ||||||    
T  6292520 gagagcttatgaaaataagctgaaaacagcttatgaacatgtca-taagctgtttt-aaaaattctcccaaacaatctcaaaagtgcttatgtcagtaga 6292617  T
Q  111 taaactcaaat 121  Q
    ||| |||||||    
T  6292618 taagctcaaat 6292628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000007
Query Start/End: Original strand, 11 - 121
Target Start/End: Complemental strand, 31517783 - 31517674
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    |||||||||||||| ||||||||||||| |||||||| || ||| |  |||||||| ||||||||| ||||||| ||||| ||||| |||||  |||| |    
T  31517783 gagagcttatgaaaataagctgaaaacagcttatgaacatgtca-tgagttgttttgataagttctcccaaacagtctcacaagtgcttatgccagtaaa 31517685  T
Q  111 taaactcaaat 121  Q
    ||| |||||||    
T  31517684 taagctcaaat 31517674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 32515469 - 32515375
Alignment:
Q  26 taagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||| ||||||||||||||  | || ||| |||| ||||| |||||| ||| ||||||| ||||| ||||| ||||||||||||||||||||||||    
T  32515469 taagttgaaaacaacttattgacatgtca-tacgctgtttccataagctctcccaaacagtctcacaagtgcttatgttagtagataaactcaaat 32515375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 81 - 139
Target Start/End: Complemental strand, 6231790 - 6231732
Alignment:
Q  81 aacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacaggt 139  Q
    |||||||||| || |||||||| |||||||||| ||||||| |||||||||||||||||    
T  6231790 aacaatctcacaaatgtttatgctagtagataacctcaaataaaccaattcaaacaggt 6231732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000007
Query Start/End: Original strand, 12 - 121
Target Start/End: Complemental strand, 37593726 - 37593618
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagat 111  Q
    ||||||||||||| ||||||||||||| |||||||| || ||| || ||||| ||||| |||| | ||||||| ||| | |||||||||||  |||| ||    
T  37593726 agagcttatgaaaataagctgaaaacagcttatgaacatgtca-taagttgtgttcattagttttcccaaacagtctaacaagtgtttatgccagtatat 37593628  T
Q  112 aaactcaaat 121  Q
    || |||||||    
T  37593627 aagctcaaat 37593618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 24313672 - 24313610
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||||||| || |||||  ||||||||||| |||||||| || ||||||||||||||||||    
T  24313672 gttgttttcacaatttcttttaaacaatctcacaagtgtttgtgctagtagataaactcaaat 24313610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 15361062 - 15361103
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaa 47  Q
    |||| |||||||||||||| ||||||||||||||||||||||    
T  15361062 tcctggagagcttatgaaaataagctgaaaacaacttatgaa 15361103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 138
Target Start/End: Original strand, 17420277 - 17420355
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacagg 138  Q
    |||||||||||||| ||||| ||||| ||| | ||||||||||| || || | |||||||||| |||||||| |||||||    
T  17420277 gttgttttcataagctcttcaaaacagtctaacaagtgtttatgctaata-aaaaactcaaataaaccaattgaaacagg 17420355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 134
Target Start/End: Complemental strand, 18327142 - 18327067
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaa 134  Q
    |||||||||||||||||||||||| | | ||| ||||| |||||  ||||||||| ||||||| | ||||| ||||    
T  18327142 gttgttttcataagttcttccaaatagtgtcaaaagtgcttatgacagtagataagctcaaataagccaatccaaa 18327067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 121
Target Start/End: Complemental strand, 40414050 - 40413956
Alignment:
Q  26 taagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||| ||||||||||||||| | ||||||  | |||| |||| |||||||| ||||||||||| | ||||||| ||||  || |||||||||||||    
T  40414050 taagttgaaaacaacttatggacatttcatca-gttgctttcgtaagttctcccaaacaatcttacaagtgttgatgtcggttgataaactcaaat 40413956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 27 - 102
Target Start/End: Complemental strand, 42757204 - 42757130
Alignment:
Q  27 aagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatg 102  Q
    |||||||||||| ||||||||||| | | || ||||||||| |||||||||||||||| | ||| ||||| |||||    
T  42757204 aagctgaaaacagcttatgaatatgtaa-taagttgttttcgtaagttcttccaaacagtgtcacaagtggttatg 42757130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 121
Target Start/End: Original strand, 4757412 - 4757474
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||||||||||||||| |||||   ||||| |||||||||||| | ||||||| |||||||    
T  4757412 gttgttttcataagttctgccaaatggtctcacaagtgtttatgtcaatagataagctcaaat 4757474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 8810080 - 8810118
Alignment:
Q  63 ttttcataagttcttccaaacaatctcataagtgtttat 101  Q
    |||||||||||||||||||||||||||| ||||| ||||    
T  8810080 ttttcataagttcttccaaacaatctcagaagtgattat 8810118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 15581328 - 15581382
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataa 113  Q
    ||||||| ||| || ||||||||||||||||| ||||| |||||| |||||||||    
T  15581328 gttgtttccattagctcttccaaacaatctcacaagtgcttatgtcagtagataa 15581382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 28348729 - 28348783
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataa 113  Q
    ||||||||| |||  |||| |||||||||||| ||||||||||| ||||||||||    
T  28348729 gttgttttcgtaatatctttcaaacaatctcacaagtgtttatgctagtagataa 28348783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Original strand, 34290268 - 34290302
Alignment:
Q  16 cttatgaaattaagctgaaaacaacttatgaatat 50  Q
    ||||||||| |||||||||||||||||||||||||    
T  34290268 cttatgaaaataagctgaaaacaacttatgaatat 34290302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 98
Target Start/End: Complemental strand, 38170732 - 38170647
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtt 98  Q
    |||||||| ||||  ||||||||||||||||||||| || ||| || | |||||||||||| ||| |||| || ||||| |||||||    
T  38170732 agagcttaggaaaacaagctgaaaacaacttatgaacatgtca-taagctgttttcataagctctcccaagcagtctcacaagtgtt 38170647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 63 - 140
Target Start/End: Complemental strand, 4034009 - 4033932
Alignment:
Q  63 ttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacaggtt 140  Q
    |||||||||| |||  |||||||||||| |||||||||||  |||||| ||  ||||||||  |||| ||||||||||    
T  4034009 ttttcataagctctctcaaacaatctcacaagtgtttatgccagtagacaagttcaaatgagtcaatgcaaacaggtt 4033932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 122
Target Start/End: Complemental strand, 4768866 - 4768762
Alignment:
Q  17 ttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaact 116  Q
    ||||| || |||||||||||||| ||||| | || || ||| | ||||||| |||||| | ||||||  ||||| |||||||||||  ||| ||||||||    
T  4768866 ttatggaaataagctgaaaacaagttatggacatgtc-gtaagctgttttcgtaagttttcccaaactgtctcacaagtgtttatgccagttgataaact 4768768  T
Q  117 caaatg 122  Q
    ||||||    
T  4768767 caaatg 4768762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 25479603 - 25479644
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaa 47  Q
    |||| |||||||||||||| |||||||||||||||| |||||    
T  25479603 tcctagagagcttatgaaaataagctgaaaacaactaatgaa 25479644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 14 - 139
Target Start/End: Complemental strand, 33723422 - 33723298
Alignment:
Q  14 agcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataa 113  Q
    |||||||| || ||||||||||||| || ||||| || |||  | | ||||| |||||||| | |||| || ||||| ||||||||||| ||||||||||    
T  33723422 agcttatggaaataagctgaaaacatctcatgaacatgtcatga-gctgtttccataagttttcccaagcagtctcacaagtgtttatggtagtagataa 33723324  T
Q  114 actcaaatgaaccaattcaaacaggt 139  Q
      |||||| |  |||| |||||||||    
T  33723323 gttcaaataagtcaatccaaacaggt 33723298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 136
Target Start/End: Original strand, 36070255 - 36070332
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaaca 136  Q
    |||||||||||||||||| | ||||| ||||| ||||| |||||  || ||||||  |||||| ||||||| ||||||    
T  36070255 gttgttttcataagttctcctaaacagtctcacaagtgcttatgccagaagataatatcaaataaaccaatccaaaca 36070332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 26 - 95
Target Start/End: Original strand, 38578570 - 38578638
Alignment:
Q  26 taagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagt 95  Q
    |||||| |||||||||||||||||| | | || ||||||||||||||||  |||||||| ||||| ||||    
T  38578570 taagctcaaaacaacttatgaatatgtta-taagttgttttcataagttagtccaaacagtctcacaagt 38578638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 46; Significance: 1e-16; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 12 - 121
Target Start/End: Original strand, 6950350 - 6950458
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagat 111  Q
    |||||||||| || |||||||||||||||||||  | || ||| || ||||||| |||||| ||| ||||||||||||| || ||||||||  |||||||    
T  6950350 agagcttatggaaataagctgaaaacaacttatcgacatgtca-taggttgtttacataagctctcccaaacaatctcacaaatgtttatgccagtagat 6950448  T
Q  112 aaactcaaat 121  Q
    ||||||||||    
T  6950449 aaactcaaat 6950458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 2488004 - 2487927
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaaca 136  Q
    |||||||||||||||||| ||||||| ||||| ||||| |||||| ||||||| ||||||||| | ||||| ||||||    
T  2488004 gttgttttcataagttctcccaaacagtctcacaagtgcttatgtcagtagatgaactcaaataagccaatccaaaca 2487927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 16162836 - 16162913
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacagg 138  Q
    |||||||||||||| |  |||||| ||||| ||||||||||| |||||||||||||||||| | ||||| ||||||||    
T  16162836 tgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacagg 16162913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 1664450 - 1664505
Alignment:
Q  66 tcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||| ||| ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  1664450 tcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaat 1664505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 59 - 138
Target Start/End: Complemental strand, 7918777 - 7918699
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacagg 138  Q
    |||||||||||||| ||| ||||||| ||||| ||||||||||| ||||||||||  | |||| || |||||||||||||    
T  7918777 gttgttttcataagctctcccaaacagtctcacaagtgtttatgctagtagataagtttaaat-aatcaattcaaacagg 7918699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 26 - 89
Target Start/End: Complemental strand, 779089 - 779027
Alignment:
Q  26 taagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctc 89  Q
    |||| ||||||||||||||||| || ||| || ||||||||| ||||||||| |||||||||||    
T  779089 taagatgaaaacaacttatgaacatgtca-taagttgttttcgtaagttctttcaaacaatctc 779027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 66 - 121
Target Start/End: Complemental strand, 1892213 - 1892158
Alignment:
Q  66 tcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||| ||| ||||||||||||| |||||||||||   ||||||||||||||||    
T  1892213 tcataagctctgccaaacaatctcacaagtgtttatgacggtagataaactcaaat 1892158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 102
Target Start/End: Original strand, 12851198 - 12851295
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatc--tcataagtgtttatg 102  Q
    ||||||||||||||||||| ||||| ||||||| |||||||| || | | || | |||||||||||||| | ||||||| ||  ||| |||||||||||    
T  12851198 tccttgagagcttatgaaaataagccgaaaacatcttatgaacatgtta-taagctgttttcataagttttcccaaacagtctatcacaagtgtttatg 12851295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 121
Target Start/End: Original strand, 4560584 - 4560638
Alignment:
Q  67 cataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||||||||||||||| |||| ||||| |||||| | ||||||| |||||||    
T  4560584 cataagttcttccaaacaacctcacaagtgcttatgtcaatagataagctcaaat 4560638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 13652298 - 13652347
Alignment:
Q  67 cataagttcttccaaacaatctcataagtgtttatgttagtagataaact 116  Q
    |||||| |||||||||||| |||| ||||| |||||| ||||||||||||    
T  13652298 cataagctcttccaaacaacctcacaagtgcttatgtgagtagataaact 13652347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 67 - 116
Target Start/End: Original strand, 13710941 - 13710990
Alignment:
Q  67 cataagttcttccaaacaatctcataagtgtttatgttagtagataaact 116  Q
    |||||| |||||||||||| |||| ||||| |||||| ||||||||||||    
T  13710941 cataagctcttccaaacaacctcacaagtgcttatgtgagtagataaact 13710990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 20672772 - 20672813
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaa 47  Q
    |||| |||||||||||||| ||||||||||||| ||||||||    
T  20672772 tcctggagagcttatgaaaataagctgaaaacagcttatgaa 20672813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 47
Target Start/End: Original strand, 30389121 - 30389162
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaa 47  Q
    |||| |||| ||||||||| ||||||||||||||||||||||    
T  30389121 tcctagagaacttatgaaaataagctgaaaacaacttatgaa 30389162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 137
Target Start/End: Original strand, 30657375 - 30657438
Alignment:
Q  74 tcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacag 137  Q
    ||||||||||||||||| ||||| |||||| ||||||||||||||||| || ||||||||||||    
T  30657375 tcttccaaacaatctcaaaagtgcttatgtcagtagataaactcaaataaatcaattcaaacag 30657438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 61 - 138
Target Start/End: Complemental strand, 44014792 - 44014715
Alignment:
Q  61 tgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacagg 138  Q
    |||||||||||||| |  |||||| ||||| ||||||||||| |||||||||||||||||| | ||||| ||||||||    
T  44014792 tgttttcataagttttctcaaacagtctcacaagtgtttatgctagtagataaactcaaataagccaatccaaacagg 44014715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 9 - 113
Target Start/End: Original strand, 43115081 - 43115184
Alignment:
Q  9 ttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagta 108  Q
    ||||||||||||| || |||||||||||||| ||||| | || ||| || ||||||| |||||  ||||||||||||||||| ||||| |||||| | ||    
T  43115081 ttgagagcttatggaaataagctgaaaacaagttatggacatgtca-taagttgtttccataaactcttccaaacaatctcacaagtgattatgtcaata 43115179  T
Q  109 gataa 113  Q
    |||||    
T  43115180 gataa 43115184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 11 - 121
Target Start/End: Original strand, 24281074 - 24281183
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    |||||||||||||| |||| ||||||||||||||| | || ||| || |||||||||||||| |||  ||||||||| || ||||| ||||   ||||||    
T  24281074 gagagcttatgaaagtaagttgaaaacaacttatggagatatca-taagttgttttcataagctctctcaaacaatcacacaagtgcttataccagtaga 24281172  T
Q  111 taaactcaaat 121  Q
    || ||||||||    
T  24281173 tagactcaaat 24281183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 121
Target Start/End: Complemental strand, 41848708 - 41848650
Alignment:
Q  63 ttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||||||| || | |||||||||| | ||||||||||||||||||||||||||||||    
T  41848708 ttttcataagctcgtacaaacaatcttacaagtgtttatgttagtagataaactcaaat 41848650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 69 - 137
Target Start/End: Complemental strand, 25459616 - 25459548
Alignment:
Q  69 taagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacag 137  Q
    |||| ||||||||||||||||| ||||| ||||| |||| ||||| ||||||| || |||| |||||||    
T  25459616 taagctcttccaaacaatctcacaagtgcttatgctagttgataagctcaaataaatcaatccaaacag 25459548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 137
Target Start/End: Original strand, 11253523 - 11253653
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgtta 105  Q
    |||| ||||||||| | || || ||||||||||  ||||  |||| ||| || |||||||| |||| |||| ||||||| ||||  ||||| ||||| ||    
T  11253523 tcctagagagcttagggaaataggctgaaaacagtttatagatatgtca-taagttgtttttataaattctgccaaacagtctctcaagtgcttatgcta 11253621  T
Q  106 gtagataaactcaaatgaaccaattcaaacag 137  Q
    |||||||| ||||||| |  ||||||||||||    
T  11253622 gtagataatctcaaataagtcaattcaaacag 11253653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 14 - 121
Target Start/End: Original strand, 42745068 - 42745174
Alignment:
Q  14 agcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataa 113  Q
    |||||||| || |||| ||||||||||||||||| || ||| || ||||||| ||||| |||||| ||| ||| ||| ||||| ||||| |||||  |||    
T  42745068 agcttatggaaataagatgaaaacaacttatgaacatgtca-taagttgtttacataaattcttctaaataatatcacaagtgcttatgatagtaagtaa 42745166  T
Q  114 actcaaat 121  Q
    ||| ||||    
T  42745167 acttaaat 42745174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 139
Target Start/End: Original strand, 44237524 - 44237571
Alignment:
Q  92 aagtgtttatgttagtagataaactcaaatgaaccaattcaaacaggt 139  Q
    ||||| |||||| ||||||||||||||||| |||||||| ||||||||    
T  44237524 aagtgcttatgtcagtagataaactcaaataaaccaatttaaacaggt 44237571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 47249524 - 47249455
Alignment:
Q  16 cttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaat 86  Q
    ||||||||| |||||  ||||||||||||||| || ||| || || |||||||||||||||| ||||||||    
T  47249524 cttatgaaaataagccaaaaacaacttatgaacatgtca-taagtggttttcataagttctttcaaacaat 47249455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 113
Target Start/End: Original strand, 50211809 - 50211863
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataa 113  Q
    ||||||||||||||||||  |||||| ||| | ||||| ||||||||||||||||    
T  50211809 gttgttttcataagttctctcaaacagtcttacaagtgcttatgttagtagataa 50211863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 11 - 96
Target Start/End: Complemental strand, 14548764 - 14548680
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtg 96  Q
    ||||||||||| || ||||||||||||| | ||| || || ||| ||||||||||||||||| |||  |||||| ||||| |||||    
T  14548764 gagagcttatggaaataagctgaaaacagcctattaaaatgtca-tacgttgttttcataagctctctcaaacagtctcacaagtg 14548680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 64 - 137
Target Start/End: Complemental strand, 35903158 - 35903085
Alignment:
Q  64 tttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacag 137  Q
    |||||||||||||   ||||| | ||||||||| |||||||||| ||| ||||||||| |  ||||||||||||    
T  35903158 tttcataagttctctgaaacagtgtcataagtgcttatgttagttgatgaactcaaataagtcaattcaaacag 35903085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 40665514 - 40665555
Alignment:
Q  80 aaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||||||  |||||||||||||||||||||||||| ||||    
T  40665514 aaacaatctactaagtgtttatgttagtagataaacttaaat 40665555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 45541603 - 45541687
Alignment:
Q  16 cttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttat 101  Q
    ||||||| | ||| ||||||||| |||||||| || ||| || | |||||||||||||||||| ||||| ||| | ||||||||||    
T  45541603 cttatgagaataacctgaaaacagcttatgaacatgtca-taagctgttttcataagttcttctaaacagtcttacaagtgtttat 45541687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 59 - 136
Target Start/End: Complemental strand, 48286806 - 48286729
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaaca 136  Q
    |||||||||||||||||| || || | ||||| | |||||| |||  |||||||| ||||||| || |||||||||||    
T  48286806 gttgttttcataagttctccctaatagtctcaaaggtgtttttgtccgtagataagctcaaataaatcaattcaaaca 48286729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 42
Target Start/End: Complemental strand, 51206543 - 51206510
Alignment:
Q  9 ttgagagcttatgaaattaagctgaaaacaactt 42  Q
    |||||||||||||||| |||||||||||||||||    
T  51206543 ttgagagcttatgaaaataagctgaaaacaactt 51206510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.00000000003; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.00000000003
Query Start/End: Original strand, 59 - 127
Target Start/End: Original strand, 27857432 - 27857500
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaacca 127  Q
    |||||||||||||| ||| ||||||| | ||| |||||| ||||| ||||||||||||||||| |||||    
T  27857432 gttgttttcataagctctcccaaacagtttcacaagtgtctatgtcagtagataaactcaaataaacca 27857500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 114
Target Start/End: Original strand, 10031759 - 10031861
Alignment:
Q  11 gagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgttagtaga 110  Q
    ||||||||| | || |||| ||||||||||||||| |||| || ||| |||| ||||||| | |||| |||||| ||||| ||||| |||||| ||||||    
T  10031759 gagagcttaaggaaataagatgaaaacaacttatggatatgtc-gtaagttggtttcataggctctttcaaacagtctcacaagtgcttatgtcagtaga 10031857  T
Q  111 taaa 114  Q
    ||||    
T  10031858 taaa 10031861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 26559235 - 26559173
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    |||||||||||||||||||||||||| ||||| || || |||||  ||||| |||||||||||    
T  26559235 gttgttttcataagttcttccaaacagtctcacaaatgcttatgccagtaggtaaactcaaat 26559173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 93 - 139
Target Start/End: Complemental strand, 31672491 - 31672445
Alignment:
Q  93 agtgtttatgttagtagataaactcaaatgaaccaattcaaacaggt 139  Q
    ||||||||||| ||||||||||||||||| |||||||||||| ||||    
T  31672491 agtgtttatgtgagtagataaactcaaataaaccaattcaaataggt 31672445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 101
Target Start/End: Original strand, 769170 - 769254
Alignment:
Q  16 cttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttat 101  Q
    |||| |||| |||| |||||||| |||||||| || ||| || | ||||||||||||||| |||||||| ||||| ||||||||||    
T  769170 cttaagaaagtaagttgaaaacagcttatgaacatgtca-taagatgttttcataagttcatccaaacagtctcacaagtgtttat 769254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 50
Target Start/End: Original strand, 31420975 - 31421011
Alignment:
Q  14 agcttatgaaattaagctgaaaacaacttatgaatat 50  Q
    ||||||||||| |||||||||||||||||||||||||    
T  31420975 agcttatgaaaataagctgaaaacaacttatgaatat 31421011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000007
Query Start/End: Original strand, 66 - 130
Target Start/End: Complemental strand, 34429703 - 34429639
Alignment:
Q  66 tcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaatt 130  Q
    ||||||| | ||||||||||| ||  ||||||||||| |||||||||| ||||||| ||||||||    
T  34429703 tcataagcttttccaaacaatatctcaagtgtttatgctagtagataagctcaaataaaccaatt 34429639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 102
Target Start/End: Original strand, 30863274 - 30863363
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatg 102  Q
    |||||||||  || |||||||||||||||||||| | || ||| || |||||||||||||| ||| ||||| | ||| | |||||||||||    
T  30863274 agagcttatagaagtaagctgaaaacaacttatgtacatgtca-taagttgttttcataagctctaccaaagagtctaacaagtgtttatg 30863363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 121
Target Start/End: Original strand, 31774455 - 31774513
Alignment:
Q  63 ttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||| || ||||||||||| ||||||||||| |||||   ||||||||||||||||    
T  31774455 ttttcatgagctcttccaaacagtctcataagtgcttatgccggtagataaactcaaat 31774513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 80 - 121
Target Start/End: Complemental strand, 7351646 - 7351605
Alignment:
Q  80 aaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||||||| ||||| |||||| |||||||||||||||||    
T  7351646 aaacaatctcacaagtgcttatgtcagtagataaactcaaat 7351605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 7945932 - 7945820
Alignment:
Q  6 tccttgagagcttatgaaattaagctgaaaacaacttatgaatatttcagtacgttgttttcataagttcttccaaacaatctcataagtgtttatgtta 105  Q
    |||| ||||||||||| || |||||| ||||||||| || || ||  || || ||||||||||||| |||| |||||| || |||  |||| |||||| |    
T  7945932 tcctggagagcttatggaaataagcttaaaacaactaataaacatgcca-taagttgttttcataatttctcccaaaccatgtcacgagtgcttatgtca 7945834  T
Q  106 gtagataaactcaa 119  Q
    |||||||| |||||    
T  7945833 gtagataagctcaa 7945820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 12 - 45
Target Start/End: Original strand, 9027606 - 9027639
Alignment:
Q  12 agagcttatgaaattaagctgaaaacaacttatg 45  Q
    ||||||||||||| ||||||||||||||||||||    
T  9027606 agagcttatgaaaataagctgaaaacaacttatg 9027639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0199 (Bit Score: 36; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0199
Description:

Target: scaffold0199; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 66 - 121
Target Start/End: Original strand, 6891 - 6946
Alignment:
Q  66 tcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||| ||| ||||||| ||||| ||||||||||| ||||||||||||||||||    
T  6891 tcataagctctcccaaacagtctcacaagtgtttatgctagtagataaactcaaat 6946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0141 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0141
Description:

Target: scaffold0141; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 59 - 121
Target Start/End: Complemental strand, 9774 - 9712
Alignment:
Q  59 gttgttttcataagttcttccaaacaatctcataagtgtttatgttagtagataaactcaaat 121  Q
    ||||||| |||| | ||| ||||||| ||||| |||| |||||||||||||||||||||||||    
T  9774 gttgtttccataggctctcccaaacagtctcacaagtatttatgttagtagataaactcaaat 9712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0064 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Complemental strand, 53823 - 53758
Alignment:
Q  73 ttcttccaaacaatctcataagtgtttatgttagtagataaactcaaatgaaccaattcaaacagg 138  Q
    ||||||||||||||||||  |||||||||| || ||||||||  |||||||| |||| ||||||||    
T  53823 ttcttccaaacaatctcaacagtgtttatgctactagataaaaccaaatgaatcaatccaaacagg 53758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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