View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_low_12 (Length: 469)
Name: NF9201_low_12
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 203 - 343
Target Start/End: Complemental strand, 21255297 - 21255157
Alignment:
| Q |
203 |
aaaccaaactcattttcacaattaaaaaataataataaatgagaatggaaaaaccacgttacaaaataagcacttacacaatgccaatatttaaatcctt |
302 |
Q |
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| T |
21255297 |
aaaccaaactcattttcataattaaaaaataataataaacgagaatggaaaagccatgttacaaaataagcacttaaacaatgccaatatttaaaacctt |
21255198 |
T |
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| Q |
303 |
gtatgcaactatctaacgaaaatgtttgtatctgcataaca |
343 |
Q |
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| T |
21255197 |
gtatgtaactatctaatgaaaatgtttgtatccacataaca |
21255157 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 247 - 297
Target Start/End: Original strand, 20984505 - 20984555
Alignment:
| Q |
247 |
atggaaaaaccacgttacaaaataagcacttacacaatgccaatatttaaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20984505 |
atggaaaaaccacgttacaaaataagcacttacacaatgccaatatttaaa |
20984555 |
T |
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