View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9201_low_14 (Length: 425)
Name: NF9201_low_14
Description: NF9201
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9201_low_14 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 5 - 277
Target Start/End: Original strand, 47287059 - 47287331
Alignment:
| Q |
5 |
agtttggtgttttaacttcagagcttctttcagggtatgctgtttaatggacaagagattgctgtgaagaggctatcaagaagttctggtcaaggcatag |
104 |
Q |
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| T |
47287059 |
agtttggagttttaacttcagagcttctttcagggtatgctgtttaatggacaagagattgctgtgaagaggctatcaagaagttctggtcaaggcatag |
47287158 |
T |
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| Q |
105 |
aagaattcaagaatgaggtcgttttggtagccaaactacaacacagaaatcttgttaggattcttgggttttgcttggatggtgaagaaaagatgctcat |
204 |
Q |
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| T |
47287159 |
aagaattcaagaatgaggtcgttttggtagccaaactacaacacagaaatcttgttaggattcttgggttttgcttggatggtgaagaaaagatgctcat |
47287258 |
T |
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| Q |
205 |
ttatgaattcatgcccaacaaaagtctagactattttctatttggtgtgtgcatcaaaatacattttcttatt |
277 |
Q |
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| T |
47287259 |
ttatgaattcatgcccaacaaaagtctagactattttctatttggtgtgtgcatcaaaatacattttcttatt |
47287331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 315 - 410
Target Start/End: Original strand, 47287347 - 47287442
Alignment:
| Q |
315 |
atgtttcattgtaagttgagaatgtttccatattaatgaactatacctttagtgataaaaggtatagttctatctgctgggaccttcccaaaaaac |
410 |
Q |
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| T |
47287347 |
atgtttcattgtaagttgagaatgtttccatattaatgaactatacctttagtgataaaaggtatagttctatctgctgggaccttcccaaaaaac |
47287442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 259
Target Start/End: Original strand, 47636179 - 47636300
Alignment:
| Q |
138 |
aactacaacacagaaatcttgttaggattcttgggttttgcttggatggtgaagaaaagatgctcatttatgaattcatgcccaacaaaagtctagacta |
237 |
Q |
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| T |
47636179 |
aacttcaacatagaaatttagctaggcttctaggattttgcttggaaagagaagaaaagatacttgtttatgaatttgtggccaacaaaagcctcgacta |
47636278 |
T |
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| Q |
238 |
ttttctatttggtgtgtgcatc |
259 |
Q |
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| T |
47636279 |
tattctttttggtaggtgcatc |
47636300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 36438205 - 36438135
Alignment:
| Q |
95 |
caaggcatagaagaattcaagaatgaggtcgttttggtagccaaactacaacacagaaatcttgttaggat |
165 |
Q |
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| T |
36438205 |
caaggcatagaagagtttaaaaatgaggttgttttgatttcaaaacttcaacacagaaatcttgtgaggat |
36438135 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 124
Target Start/End: Original strand, 36366061 - 36366126
Alignment:
| Q |
59 |
gagattgctgtgaagaggctatcaagaagttctggtcaaggcatagaagaattcaagaatgaggtc |
124 |
Q |
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| T |
36366061 |
gagattgcagtgaagagattatcaaaaaattccggtcaaggcgttgatgaattcaagaatgaggtc |
36366126 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 51 - 123
Target Start/End: Original strand, 2672063 - 2672135
Alignment:
| Q |
51 |
atggacaagagattgctgtgaagaggctatcaagaagttctggtcaaggcatagaagaattcaagaatgaggt |
123 |
Q |
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| T |
2672063 |
atggccaagacattgctgtgaagaggttgtcaacaagctctggacaaggaaatgtagaattcaagaatgaggt |
2672135 |
T |
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